Interactions for 6C6D (chain S)
Structure details
- PDB ID: 6C6D open_in_new
- Protein: CCL5_HUMAN
- Organism: Homo sapiens
- UniProt ID: P13501 open_in_new
- Method: X-ray
- Resolution: 5.5 Å
- Date: Jan. 23, 2019
- Reference: open_in_new
- State: oligomer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Ser 5 | 58 | N-term | GLN 48 | C-C motif chemokine 5 (T) | VdWContact |
| Asp 6 | 59 | N-term | GLN 48 | C-C motif chemokine 5 (T) | HBDonor |
| Asp 6 | 59 | N-term | GLN 48 | C-C motif chemokine 5 (T) | VdWContact |
| Asp 6 | 59 | N-term | VAL 49 | C-C motif chemokine 5 (T) | VdWContact |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (T) | HBAcceptor |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (T) | HBDonor |
| Thr 8 | 61 | N-term | CYS 10 | C-C motif chemokine 5 (T) | VdWContact |
| Thr 8 | 61 | N-term | PHE 12 | C-C motif chemokine 5 (T) | Hydrophobic |
| Pro 9 | 62 | N-term | PRO 9 | C-C motif chemokine 5 (T) | VdWContact |
| Cys 10 | 63 | CX | CYS 10 | C-C motif chemokine 5 (T) | Hydrophobic |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (T) | HBAcceptor |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (T) | HBDonor |
| Cys 10 | 63 | CX | THR 8 | C-C motif chemokine 5 (T) | VdWContact |
| Cys 10 | 63 | CX | PHE 12 | C-C motif chemokine 5 (T) | VdWContact |
| Cys 10 | 63 | CX | THR 7 | C-C motif chemokine 5 (T) | HBAcceptor |
| Cys 10 | 63 | CX | THR 7 | C-C motif chemokine 5 (T) | VdWContact |
| Phe 12 | 68 | N-loop | THR 8 | C-C motif chemokine 5 (T) | Hydrophobic |
| Phe 12 | 68 | N-loop | THR 8 | C-C motif chemokine 5 (T) | VdWContact |
| Phe 12 | 68 | N-loop | LYS 33 | C-C motif chemokine 5 (T) | Hydrophobic |
| Phe 12 | 68 | N-loop | LYS 33 | C-C motif chemokine 5 (T) | VdWContact |
| Phe 28 | 87 | B1 | ARG 47 | C-C motif chemokine 5 (K) | VdWContact |
| Tyr 29 | 88 | B1 | LEU 19 | C-C motif chemokine 5 (K) | Hydrophobic |
| Tyr 29 | 88 | B1 | LEU 19 | C-C motif chemokine 5 (K) | VdWContact |
| Tyr 29 | 88 | B1 | VAL 49 | C-C motif chemokine 5 (K) | Hydrophobic |
| Tyr 29 | 88 | B1 | ILE 15 | C-C motif chemokine 5 (K) | Hydrophobic |
| Thr 30 | 89 | B1 | SER 5 | C-C motif chemokine 5 (L) | VdWContact |
| Gly 32 | 91 | 30s-loop | SER 5 | C-C motif chemokine 5 (L) | HBDonor |
| Gly 32 | 91 | 30s-loop | SER 5 | C-C motif chemokine 5 (L) | VdWContact |
| Gly 32 | 91 | 30s-loop | ALA 13 | C-C motif chemokine 5 (K) | VdWContact |
| Lys 33 | 94 | 30s-loop | PHE 12 | C-C motif chemokine 5 (T) | Hydrophobic |
| Lys 33 | 94 | 30s-loop | PHE 12 | C-C motif chemokine 5 (T) | VdWContact |
| Lys 33 | 94 | 30s-loop | ALA 13 | C-C motif chemokine 5 (K) | Hydrophobic |
| Pro 37 | 99 | 30s-loop | ALA 16 | C-C motif chemokine 5 (K) | Hydrophobic |
| Gln 48 | 115 | B3 | THR 7 | C-C motif chemokine 5 (T) | Hydrophobic |
| Gln 48 | 115 | B3 | THR 7 | C-C motif chemokine 5 (T) | VdWContact |
| Gln 48 | 115 | B3 | ASP 6 | C-C motif chemokine 5 (T) | VdWContact |
| Glu 54 | 121 | 50s-loop | ARG 17 | C-C motif chemokine 5 (K) | Anionic |
| Glu 54 | 121 | 50s-loop | ARG 17 | C-C motif chemokine 5 (K) | VdWContact |
| Ile 62 | 129 | Helix | HIS 23 | C-C motif chemokine 5 (K) | Hydrophobic |
| Asn 63 | 130 | Helix | HIS 23 | C-C motif chemokine 5 (K) | VdWContact |
| Leu 65 | 132 | Helix | LYS 45 | C-C motif chemokine 5 (K) | HBAcceptor |
| Leu 65 | 132 | Helix | LYS 45 | C-C motif chemokine 5 (K) | VdWContact |
| Glu 66 | 133 | Helix | HIS 23 | C-C motif chemokine 5 (K) | Hydrophobic |
| Glu 66 | 133 | Helix | HIS 23 | C-C motif chemokine 5 (K) | VdWContact |
| Glu 66 | 133 | Helix | LYS 45 | C-C motif chemokine 5 (K) | HBAcceptor |
| Glu 66 | 133 | Helix | LYS 45 | C-C motif chemokine 5 (K) | Anionic |
| Glu 66 | 133 | Helix | LYS 45 | C-C motif chemokine 5 (K) | VdWContact |
| Glu 66 | 133 | Helix | THR 43 | C-C motif chemokine 5 (K) | VdWContact |
| Met 67 | 134 | Helix | ARG 44 | C-C motif chemokine 5 (K) | Hydrophobic |
Interaction pattern search
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