Interactions for 6WZM (chain F)


Structure details

3D view

NGL is a WebGL based 3D viewer powered by MMTF.



Chemokine diagram

E S G P H C A N T E 30s-loop S D G R 40s-loop D P K E 50s-loopN-term M T S K L A V A L L A A F L I S A A L C E G A V L P R S A K E L R C Q C I K T Y S K P F H P K F N-termC-term A E N S C-term I V R L E K I I I V K L L C L E N W V Q R V V E K F L K R
Pick color:
 
 
 
 
 
 
 
 
 
 
 
 


Interactions found in structure

Download list in excel
Chemokine Residue Generic number Segment Partner Residue Partner Interaction Type
Ala 2 58 N-term LYS 42 Interleukin-8 (E) VdWContact
Leu 5 61 N-term GLU 93 LY3041658 Fab light chain (D) Hydrophobic
Leu 5 61 N-term GLU 93 LY3041658 Fab light chain (D) VdWContact
Leu 5 61 N-term TRP 94 LY3041658 Fab light chain (D) HBAcceptor
Leu 5 61 N-term TRP 94 LY3041658 Fab light chain (D) VdWContact
Arg 6 62 N-term TRP 94 LY3041658 Fab light chain (D) Hydrophobic
Arg 6 62 N-term TYR 110 LY3041658 Fab heavy chain (C) Hydrophobic
Arg 6 62 N-term TYR 110 LY3041658 Fab heavy chain (C) CationPi
Arg 6 62 N-term GLU 99 LY3041658 Fab heavy chain (C) HBDonor
Arg 6 62 N-term GLU 99 LY3041658 Fab heavy chain (C) Cationic
Arg 6 62 N-term GLU 99 LY3041658 Fab heavy chain (C) VdWContact
Arg 6 62 N-term ASN 91 LY3041658 Fab light chain (D) HBDonor
Arg 6 62 N-term ASN 91 LY3041658 Fab light chain (D) VdWContact
Cys 7 63 CX TRP 94 LY3041658 Fab light chain (D) Hydrophobic
Cys 7 63 CX TRP 94 LY3041658 Fab light chain (D) VdWContact
Cys 7 63 CX TRP 33 LY3041658 Fab heavy chain (C) Hydrophobic
Gln 8 66 CX PRO 106 LY3041658 Fab heavy chain (C) Hydrophobic
Ile 10 68 N-loop TYR 102 LY3041658 Fab heavy chain (C) Hydrophobic
Ile 10 68 N-loop TYR 102 LY3041658 Fab heavy chain (C) VdWContact
Ile 10 68 N-loop SER 52 LY3041658 Fab heavy chain (C) HBAcceptor
Ile 10 68 N-loop SER 52 LY3041658 Fab heavy chain (C) VdWContact
Ile 10 68 N-loop TRP 33 LY3041658 Fab heavy chain (C) Hydrophobic
Lys 11 69 N-loop THR 30 LY3041658 Fab heavy chain (C) HBDonor
Lys 11 69 N-loop THR 30 LY3041658 Fab heavy chain (C) VdWContact
Lys 11 69 N-loop SER 31 LY3041658 Fab heavy chain (C) VdWContact
Lys 11 69 N-loop GLU 28 LY3041658 Fab heavy chain (C) Cationic
Lys 11 69 N-loop GLU 28 LY3041658 Fab heavy chain (C) VdWContact
Tyr 13 71 N-loop TYR 104 LY3041658 Fab heavy chain (C) Hydrophobic
Tyr 13 71 N-loop TYR 104 LY3041658 Fab heavy chain (C) PiStacking
Tyr 13 71 N-loop TYR 104 LY3041658 Fab heavy chain (C) VdWContact
Lys 23 84 B1 GLU 29 Interleukin-8 (E) HBAcceptor
Lys 23 84 B1 GLU 29 Interleukin-8 (E) VdWContact
Glu 24 85 B1 ARG 26 Interleukin-8 (E) Hydrophobic
Glu 24 85 B1 ARG 26 Interleukin-8 (E) HBAcceptor
Glu 24 85 B1 ARG 26 Interleukin-8 (E) Anionic
Glu 24 85 B1 ARG 26 Interleukin-8 (E) VdWContact
Glu 24 85 B1 ILE 28 Interleukin-8 (E) Hydrophobic
Glu 24 85 B1 VAL 27 Interleukin-8 (E) VdWContact
Leu 25 86 B1 ARG 26 Interleukin-8 (E) VdWContact
Leu 25 86 B1 VAL 27 Interleukin-8 (E) Hydrophobic
Leu 25 86 B1 VAL 27 Interleukin-8 (E) HBAcceptor
Leu 25 86 B1 VAL 27 Interleukin-8 (E) HBDonor
Leu 25 86 B1 VAL 27 Interleukin-8 (E) VdWContact
Arg 26 87 B1 ARG 26 Interleukin-8 (E) VdWContact
Arg 26 87 B1 GLU 24 Interleukin-8 (E) Hydrophobic
Arg 26 87 B1 GLU 24 Interleukin-8 (E) HBDonor
Arg 26 87 B1 GLU 24 Interleukin-8 (E) Cationic
Arg 26 87 B1 GLU 24 Interleukin-8 (E) VdWContact
Arg 26 87 B1 LEU 25 Interleukin-8 (E) VdWContact
Val 27 88 B1 GLU 24 Interleukin-8 (E) VdWContact
Val 27 88 B1 LEU 25 Interleukin-8 (E) Hydrophobic
Val 27 88 B1 LEU 25 Interleukin-8 (E) HBAcceptor
Val 27 88 B1 LEU 25 Interleukin-8 (E) HBDonor
Val 27 88 B1 LEU 25 Interleukin-8 (E) VdWContact
Val 27 88 B1 PHE 65 Interleukin-8 (E) Hydrophobic
Ile 28 89 B1 GLU 24 Interleukin-8 (E) Hydrophobic
Glu 29 90 30s-loop PHE 65 Interleukin-8 (E) Hydrophobic
Glu 29 90 30s-loop LYS 23 Interleukin-8 (E) Hydrophobic
Glu 29 90 30s-loop LYS 23 Interleukin-8 (E) HBDonor
Glu 29 90 30s-loop LYS 23 Interleukin-8 (E) VdWContact
His 33 94 30s-loop TRP 94 LY3041658 Fab light chain (D) VdWContact
Cys 34 95 30s-loop ASN 59 LY3041658 Fab heavy chain (C) VdWContact
Ala 35 96 30s-loop ALA 58 LY3041658 Fab heavy chain (C) VdWContact
Ala 35 96 30s-loop ASN 59 LY3041658 Fab heavy chain (C) HBDonor
Ala 35 96 30s-loop ASN 59 LY3041658 Fab heavy chain (C) VdWContact
Asn 36 97 30s-loop SER 57 LY3041658 Fab heavy chain (C) VdWContact
Ile 40 102 B2 PRO 106 LY3041658 Fab heavy chain (C) Hydrophobic
Arg 47 114 40s-loop TYR 105 LY3041658 Fab heavy chain (C) HBDonor
Arg 47 114 40s-loop TYR 105 LY3041658 Fab heavy chain (C) VdWContact
Glu 48 115 B3 PRO 106 LY3041658 Fab heavy chain (C) Hydrophobic
Glu 48 115 B3 PRO 106 LY3041658 Fab heavy chain (C) VdWContact
Glu 48 115 B3 TYR 105 LY3041658 Fab heavy chain (C) VdWContact
Leu 49 116 B3 TYR 104 LY3041658 Fab heavy chain (C) Hydrophobic
Leu 49 116 B3 TYR 105 LY3041658 Fab heavy chain (C) Hydrophobic
Cys 50 117 B3 TYR 104 LY3041658 Fab heavy chain (C) Hydrophobic
Cys 50 117 B3 TYR 104 LY3041658 Fab heavy chain (C) HBDonor
Cys 50 117 B3 TYR 104 LY3041658 Fab heavy chain (C) VdWContact
Glu 63 130 Helix GLU 63 Interleukin-8 (E) VdWContact
Phe 65 132 Helix GLU 29 Interleukin-8 (E) Hydrophobic
Phe 65 132 Helix VAL 27 Interleukin-8 (E) Hydrophobic
Phe 65 132 Helix VAL 27 Interleukin-8 (E) VdWContact

Ligand interaction network

EDO_B_301

PG4_F_101

Interaction pattern search
Search complexes with similar interaction patterns:

Specify the minimum similarity (0.00 no similarity, 1.00 identical)