Interactions for 7O7F (chain I)
Structure details
- PDB ID: 7O7F open_in_new
- Protein: CCL5_HUMAN
- Organism: Homo sapiens
- UniProt ID: P13501 open_in_new
- Method: Cryo-em
- Resolution: 3.15 Å
- Date: June 30, 2021
- Reference: 10.1126/SCIADV.ABG8685 open_in_new
- State: monomer
Chemokine diagram
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Interactions found in structure
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| Chemokine Residue | Generic number | Segment | Partner Residue | Partner | Interaction Type |
|---|---|---|---|---|---|
| Lys 2 | 32 | N-term | GLU 283 | C-C chemokine receptor type 5 (C) | VdWContact |
| Lys 2 | 32 | N-term | THR 105 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Lys 2 | 32 | N-term | TRP 86 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Val 3 | 33 | N-term | TYR 37 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Val 3 | 33 | N-term | TRP 86 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Val 3 | 33 | N-term | TRP 86 | C-C chemokine receptor type 5 (C) | VdWContact |
| Val 3 | 33 | N-term | GLU 283 | C-C chemokine receptor type 5 (C) | VdWContact |
| Val 3 | 33 | N-term | TYR 108 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Val 3 | 33 | N-term | TYR 108 | C-C chemokine receptor type 5 (C) | VdWContact |
| Ala 5 | 35 | N-term | GLN 280 | C-C chemokine receptor type 5 (C) | HBAcceptor |
| Ala 5 | 35 | N-term | GLN 280 | C-C chemokine receptor type 5 (C) | VdWContact |
| Ala 5 | 35 | N-term | LYS 26 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Ala 5 | 35 | N-term | LYS 26 | C-C chemokine receptor type 5 (C) | HBAcceptor |
| Ala 5 | 35 | N-term | LYS 26 | C-C chemokine receptor type 5 (C) | Anionic |
| Ala 5 | 35 | N-term | LYS 26 | C-C chemokine receptor type 5 (C) | VdWContact |
| Ala 5 | 35 | N-term | TYR 89 | C-C chemokine receptor type 5 (C) | VdWContact |
| Ala 5 | 35 | N-term | ALA 30 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Ala 6 | 36 | N-term | TRP 86 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Ala 6 | 36 | N-term | TRP 86 | C-C chemokine receptor type 5 (C) | VdWContact |
| Ala 6 | 36 | N-term | TYR 89 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Ala 7 | 37 | N-term | GLN 280 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Ala 7 | 37 | N-term | LYS 22 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Ala 7 | 37 | N-term | LYS 22 | C-C chemokine receptor type 5 (C) | VdWContact |
| Ala 7 | 37 | N-term | LYS 26 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Ala 7 | 37 | N-term | LYS 26 | C-C chemokine receptor type 5 (C) | VdWContact |
| Ala 7 | 37 | N-term | ASP 276 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Ala 7 | 37 | N-term | ASP 276 | C-C chemokine receptor type 5 (C) | VdWContact |
| Leu 8 | 38 | N-term | THR 177 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Leu 8 | 38 | N-term | THR 177 | C-C chemokine receptor type 5 (C) | VdWContact |
| Cys 10 | 63 | CX | PRO 19 | C-C chemokine receptor type 5 (C) | VdWContact |
| Phe 12 | 68 | N-loop | CYS 20 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Phe 12 | 68 | N-loop | CYS 20 | C-C chemokine receptor type 5 (C) | VdWContact |
| Phe 12 | 68 | N-loop | CYS 269 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Phe 28 | 87 | B1 | GLU 172 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Tyr 29 | 88 | B1 | HIS 181 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Tyr 29 | 88 | B1 | HIS 181 | C-C chemokine receptor type 5 (C) | VdWContact |
| Thr 30 | 89 | B1 | HIS 181 | C-C chemokine receptor type 5 (C) | VdWContact |
| Gly 32 | 91 | 30s-loop | SER 180 | C-C chemokine receptor type 5 (C) | HBDonor |
| Gly 32 | 91 | 30s-loop | SER 180 | C-C chemokine receptor type 5 (C) | VdWContact |
| Gly 32 | 91 | 30s-loop | PHE 182 | C-C chemokine receptor type 5 (C) | VdWContact |
| Gly 32 | 91 | 30s-loop | TYR 187 | C-C chemokine receptor type 5 (C) | VdWContact |
| Lys 33 | 94 | 30s-loop | ASN 258 | C-C chemokine receptor type 5 (C) | VdWContact |
| Lys 33 | 94 | 30s-loop | LYS 191 | C-C chemokine receptor type 5 (C) | VdWContact |
| Cys 34 | 95 | 30s-loop | LYS 191 | C-C chemokine receptor type 5 (C) | VdWContact |
| Cys 34 | 95 | 30s-loop | TYR 187 | C-C chemokine receptor type 5 (C) | VdWContact |
| Ser 35 | 96 | 30s-loop | TYR 187 | C-C chemokine receptor type 5 (C) | HBAcceptor |
| Ser 35 | 96 | 30s-loop | TYR 187 | C-C chemokine receptor type 5 (C) | VdWContact |
| Ser 35 | 96 | 30s-loop | GLN 188 | C-C chemokine receptor type 5 (C) | VdWContact |
| Pro 37 | 99 | 30s-loop | TYR 187 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Pro 37 | 99 | 30s-loop | TYR 187 | C-C chemokine receptor type 5 (C) | VdWContact |
| Arg 47 | 114 | 40s-loop | THR 16 | C-C chemokine receptor type 5 (C) | Cationic |
| Arg 47 | 114 | 40s-loop | GLU 18 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Arg 47 | 114 | 40s-loop | GLU 18 | C-C chemokine receptor type 5 (C) | Cationic |
| Arg 47 | 114 | 40s-loop | GLU 18 | C-C chemokine receptor type 5 (C) | VdWContact |
| Gln 48 | 115 | B3 | GLU 18 | C-C chemokine receptor type 5 (C) | HBDonor |
| Gln 48 | 115 | B3 | GLU 18 | C-C chemokine receptor type 5 (C) | VdWContact |
| Pro 53 | 120 | 50s-loop | TYR 184 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Pro 53 | 120 | 50s-loop | TYR 184 | C-C chemokine receptor type 5 (C) | VdWContact |
| Glu 54 | 121 | 50s-loop | TYR 184 | C-C chemokine receptor type 5 (C) | Hydrophobic |
| Glu 54 | 121 | 50s-loop | TYR 184 | C-C chemokine receptor type 5 (C) | VdWContact |
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