Interactions for 2N55 — Binding Partner: CXCR4 N-terminal peptide


Structure details

  • Chemokine Chain: A
  • Partner Chain: B
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Chemokine diagram

N T P N C A L Q 30s-loop K N N N R 40s-loop D P K C 50s-loopC-term G M K P V S L S Y R C P C R F F E S H V A R A N N-term L I K L H K V I V A R L I C V Q K W C Q E Y L E K A L N K
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Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Leu 5 59 N-term THR 213 B HBDonor
Leu 5 59 N-term THR 213 B VdWContact
Leu 5 59 N-term ASN 211 B HBAcceptor
Leu 5 59 N-term ASN 211 B VdWContact
Tyr 7 61 N-term TYR 212 B HBAcceptor
Tyr 7 61 N-term TYR 212 B VdWContact
Tyr 7 61 N-term ASN 211 B VdWContact
Pro 10 66 CX TYR 212 B Hydrophobic
Cys 11 67 CX SER 218 B VdWContact
Arg 12 68 N-loop SER 218 B HBDonor
Arg 12 68 N-loop SER 218 B VdWContact
Phe 13 69 N-loop MET 224 B Hydrophobic
Phe 14 70 N-loop MET 224 B Hydrophobic
Phe 14 70 N-loop MET 224 B VdWContact
Glu 15 71 N-loop TYR 221 B Hydrophobic
Glu 15 71 N-loop TYR 221 B VdWContact
Ser 16 72 N-loop MET 224 B VdWContact
Ser 16 72 N-loop GLU 226 B HBDonor
Ser 16 72 N-loop GLU 226 B VdWContact
Ser 16 72 N-loop LYS 225 B VdWContact
His 17 74 N-loop PHE 236 B Hydrophobic
His 17 74 N-loop PHE 236 B PiStacking
His 17 74 N-loop PRO 227 B VdWContact
His 17 74 N-loop LYS 225 B VdWContact
Arg 20 80 N-loop ILE 204 B VdWContact
Arg 20 80 N-loop GLY 199 B VdWContact
His 25 85 B1 TYR 207 B Hydrophobic
His 25 85 B1 TYR 207 B VdWContact
Leu 26 86 B1 ILE 206 B Hydrophobic
Leu 26 86 B1 ILE 206 B VdWContact
Leu 26 86 B1 ILE 204 B Hydrophobic
Lys 27 87 B1 TYR 212 B HBDonor
Lys 27 87 B1 TYR 212 B VdWContact
Lys 27 87 B1 TYR 207 B Hydrophobic
Lys 27 87 B1 TYR 207 B HBDonor
Lys 27 87 B1 TYR 207 B VdWContact
Lys 27 87 B1 SER 209 B VdWContact
Lys 27 87 B1 GLU 214 B HBDonor
Lys 27 87 B1 GLU 214 B Cationic
Lys 27 87 B1 GLU 214 B VdWContact
Lys 27 87 B1 ILE 206 B VdWContact
Ile 28 88 B1 TYR 207 B HBDonor
Ile 28 88 B1 TYR 207 B VdWContact
Ile 28 88 B1 SER 209 B HBAcceptor
Ile 28 88 B1 SER 209 B VdWContact
Ile 28 88 B1 THR 208 B VdWContact
Ile 28 88 B1 ILE 206 B Hydrophobic
Leu 29 89 B1 TYR 212 B Hydrophobic
Leu 29 89 B1 TYR 212 B VdWContact
Leu 29 89 B1 SER 209 B VdWContact
Asn 30 90 30s-loop SER 209 B HBDonor
Asn 30 90 30s-loop THR 208 B HBDonor
Asn 30 90 30s-loop THR 208 B VdWContact
Thr 31 91 30s-loop ASP 210 B VdWContact
Val 39 102 B2 TYR 212 B VdWContact
Arg 41 104 B2 GLU 214 B HBDonor
Arg 41 104 B2 GLU 214 B Cationic
Arg 41 104 B2 GLU 214 B VdWContact
Leu 42 105 B2 TYR 221 B Hydrophobic
Leu 42 105 B2 TYR 221 B VdWContact
Arg 47 114 40s-loop ASP 220 B HBDonor
Arg 47 114 40s-loop ASP 220 B Cationic
Arg 47 114 40s-loop ASP 220 B VdWContact
Arg 47 114 40s-loop TYR 221 B VdWContact
Gln 48 115 B3 TYR 212 B VdWContact
Gln 48 115 B3 GLU 215 B Hydrophobic
Gln 48 115 B3 GLU 215 B VdWContact
Val 49 116 B3 TYR 221 B Hydrophobic
Val 49 116 B3 TYR 221 B VdWContact
Asp 52 119 50s-loop GLU 226 B Hydrophobic
Asp 52 119 50s-loop GLU 226 B VdWContact
Lys 54 121 50s-loop GLU 226 B Hydrophobic
Lys 54 121 50s-loop GLU 226 B VdWContact
Leu 55 122 50s-loop PRO 227 B Hydrophobic
Lys 56 123 Helix ARG 230 B Hydrophobic
Lys 56 123 Helix ARG 230 B VdWContact
Lys 56 123 Helix GLU 231 B Cationic
Lys 56 123 Helix PHE 229 B HBDonor
Lys 56 123 Helix PHE 229 B VdWContact
Trp 57 124 Helix ILE 204 B Hydrophobic
Trp 57 124 Helix ILE 204 B VdWContact
Tyr 61 128 Helix ILE 204 B Hydrophobic
Tyr 61 128 Helix ILE 204 B VdWContact
Tyr 61 128 Helix ILE 206 B Hydrophobic
Tyr 61 128 Helix ILE 206 B VdWContact
Lys 64 131 Helix GLU 202 B VdWContact
Lys 64 131 Helix GLY 203 B VdWContact
Ala 65 132 Helix ILE 206 B Hydrophobic
Ala 65 132 Helix ILE 206 B VdWContact
Lys 68 135 Helix SER 205 B HBAcceptor
Lys 68 135 Helix SER 205 B VdWContact
Lys 68 135 Helix TYR 207 B Hydrophobic
Lys 68 135 Helix TYR 207 B VdWContact
Lys 68 135 Helix ILE 206 B VdWContact
Lys 68 135 Helix THR 208 B Hydrophobic

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