ChemoPar-db - the chemokine partner database

Interactions for 4LMQ — Binding Partner: hu30D8 Fab

Structure details

PDB ID: 4LMQ open_in_new
Protein: CXCL12_HUMAN
Organism: Homo sapiens
UniProt ID: P48061 open_in_new

Method: X-ray
Resolution: 2.77 Å
Date: Aug. 14, 2013
Reference: 10.1158/1078-0432.CCR-13-0943 open_in_new
State: Dimer

Chemokine Chain: D
Partner Chain: H,L

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Interactions for this Binding Partner

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Chemokine Residue	Generic Number	Segment	Partner Residue	Partner Chain	Interaction Type

Chemokine Residue	Generic Number	Segment	Partner Residue	Partner Chain	Interaction Type
Ala 19	76	N-loop	TYR 100	H	HBDonor
Ala 19	76	N-loop	TYR 100	H	VdWContact
Ala 19	76	N-loop	SER 32	L	VdWContact
Ala 19	76	N-loop	TRP 92	L	Hydrophobic
Ala 19	76	N-loop	TRP 92	L	VdWContact
Ala 19	76	N-loop	TYR 91	L	Hydrophobic
Ala 19	76	N-loop	TYR 91	L	VdWContact
Ala 21	81	N-loop	PHE 96	L	Hydrophobic
Ala 21	81	N-loop	THR 94	L	Hydrophobic
Ala 21	81	N-loop	THR 94	L	VdWContact
Ala 21	81	N-loop	TRP 92	L	HBDonor
Ala 21	81	N-loop	TRP 92	L	VdWContact
Ala 21	81	N-loop	ASN 93	L	VdWContact
Arg 20	80	N-loop	TRP 92	L	Hydrophobic
Arg 20	80	N-loop	TRP 92	L	VdWContact
Arg 20	80	N-loop	ASN 93	L	VdWContact
Arg 47	114	40s-loop	ASN 99	H	HBDonor
Arg 47	114	40s-loop	ASN 99	H	VdWContact
Asn 22	82	N-loop	ASN 99	H	HBDonor
Asn 22	82	N-loop	ASN 99	H	VdWContact
Asn 22	82	N-loop	GLY 100	H	VdWContact
Asn 44	111	40s-loop	LEU 98	H	HBDonor
Asn 44	111	40s-loop	LEU 98	H	VdWContact
Asn 44	111	40s-loop	TRP 52	H	Hydrophobic
Asn 44	111	40s-loop	TRP 52	H	VdWContact
Asn 44	111	40s-loop	ASP 95	H	HBDonor
Asn 44	111	40s-loop	ASP 95	H	VdWContact
Asn 44	111	40s-loop	SER 33	H	HBAcceptor
Asn 44	111	40s-loop	SER 33	H	VdWContact
Asn 44	111	40s-loop	GLY 97	H	VdWContact
Asn 45	112	40s-loop	ASN 99	H	HBDonor
Asn 45	112	40s-loop	ASN 99	H	VdWContact
Asn 45	112	40s-loop	GLY 97	H	HBDonor
Asn 45	112	40s-loop	GLY 97	H	VdWContact
Asn 46	113	40s-loop	SER 54	H	HBAcceptor
Asn 46	113	40s-loop	SER 54	H	VdWContact
Glu 15	71	N-loop	ASN 99	H	Hydrophobic
Glu 15	71	N-loop	ASN 99	H	HBAcceptor
Glu 15	71	N-loop	ASN 99	H	VdWContact
His 17	74	N-loop	TYR 100	H	Hydrophobic
His 17	74	N-loop	TYR 100	H	VdWContact
His 17	74	N-loop	TYR 31	L	Hydrophobic
His 17	74	N-loop	TYR 31	L	PiStacking
His 17	74	N-loop	TYR 31	L	VdWContact
His 17	74	N-loop	ASN 50	L	HBAcceptor
His 17	74	N-loop	ASN 50	L	VdWContact
Leu 42	105	B2	ASN 99	H	Hydrophobic
Lys 43	106	40s-loop	TRP 52	H	Hydrophobic
Lys 43	106	40s-loop	TRP 52	H	VdWContact
Lys 43	106	40s-loop	GLU 58	H	Cationic
Lys 43	106	40s-loop	GLU 58	H	VdWContact
Ser 16	72	N-loop	TYR 100	H	VdWContact
Trp 57	124	Helix	TRP 92	L	Hydrophobic
Trp 57	124	Helix	TRP 92	L	VdWContact
Val 18	75	N-loop	ASN 99	H	Hydrophobic

Showing 1 to 55 of 55 entries

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