Interactions for 4LMQ — Binding Partner: CXCL12


Structure details

  • Chemokine Chain: F
  • Partner Chain: D
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Chemokine diagram

N T P N C A L Q 30s-loop K N N N R 40s-loop D P K L 50s-loopC-term R C P C R F F E S H V A R A N N-term L I K L H K V I V A R L I C V Q K W I Q E Y L E K A
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Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Lys 24 84 B1 ASN 30 D HBAcceptor
Lys 24 84 B1 ASN 30 D VdWContact
His 25 85 B1 LEU 29 D Hydrophobic
His 25 85 B1 LYS 27 D Hydrophobic
His 25 85 B1 LYS 27 D PiCation
His 25 85 B1 LYS 27 D VdWContact
Leu 26 86 B1 ILE 28 D HBAcceptor
Leu 26 86 B1 ILE 28 D HBDonor
Leu 26 86 B1 ILE 28 D VdWContact
Lys 27 87 B1 HIS 25 D Hydrophobic
Ile 28 88 B1 LEU 62 D Hydrophobic
Ile 28 88 B1 HIS 25 D VdWContact
Ile 28 88 B1 ILE 28 D Hydrophobic
Ile 28 88 B1 ALA 65 D Hydrophobic
Ile 28 88 B1 TYR 61 D Hydrophobic
Ile 28 88 B1 TYR 61 D HBAcceptor
Ile 28 88 B1 TYR 61 D VdWContact
Ile 28 88 B1 LEU 26 D Hydrophobic
Ile 28 88 B1 LEU 26 D HBAcceptor
Ile 28 88 B1 LEU 26 D HBDonor
Ile 28 88 B1 LEU 26 D VdWContact
Leu 29 89 B1 HIS 25 D Hydrophobic
Asn 30 90 30s-loop TYR 61 D Hydrophobic
Asn 30 90 30s-loop TYR 61 D VdWContact
Gln 37 100 30s-loop ALA 65 D Hydrophobic
Gln 37 100 30s-loop ALA 65 D VdWContact
Ile 38 101 B2 LEU 66 D Hydrophobic
Ile 38 101 B2 LEU 66 D VdWContact
Ile 38 101 B2 ALA 65 D Hydrophobic
Pro 53 120 50s-loop LEU 66 D Hydrophobic
Ile 58 125 Helix LEU 66 D Hydrophobic
Gln 59 126 Helix LYS 68 D VdWContact
Tyr 61 128 Helix ILE 28 D Hydrophobic
Tyr 61 128 Helix LEU 36 D Hydrophobic
Leu 62 129 Helix LYS 68 D Hydrophobic
Leu 62 129 Helix LEU 66 D Hydrophobic
Leu 62 129 Helix GLU 63 D Hydrophobic
Leu 62 129 Helix GLU 63 D VdWContact
Ala 65 132 Helix LEU 36 D Hydrophobic
Ala 65 132 Helix LEU 36 D VdWContact

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