Interactions

2NYZ | XCL1_HUMAN — M3 protein

Residue contacts: 51
SUMMARY
Protein
XCL1_HUMAN View protein entry
Organism
Homo sapiens
UniProt ID
P47992 View on UniProt
PDB ID
2NYZ View on PDB
Method
X-ray
Resolution
2.6 Å
Date
Dec. 25, 2007
Reference
10.1084/JEM.20071677 Open DOI
State
Monomer
Chain information
Chemokine chain
E
Partner chain
A,B
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INTERACTION TABLE
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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Lys 8 NTc.Cm2 N-term ALA 275 B Hydrophobic
Lys 8 NTc.Cm2 N-term ALA 275 B HBAcceptor
Lys 8 NTc.Cm2 N-term ALA 275 B VdWContact
Arg 9 NTc.Cm1 N-term PRO 272 B Hydrophobic
Arg 9 NTc.Cm1 N-term PRO 272 B VdWContact
Arg 9 NTc.Cm1 N-term LEU 273 B VdWContact
Thr 10 CX.4 CX ALA 275 B Hydrophobic
Thr 10 CX.4 CX ALA 275 B VdWContact
Thr 10 CX.4 CX LEU 273 B HBAcceptor
Thr 10 CX.4 CX LEU 273 B HBDonor
Thr 10 CX.4 CX LEU 273 B VdWContact
Val 12 cxb1.1 N-loop TYR 266 B Hydrophobic
Val 12 cxb1.1 N-loop TYR 266 B VdWContact
Val 12 cxb1.1 N-loop PRO 360 B Hydrophobic
Ser 13 cxb1.2 N-loop VAL 270 B VdWContact
Ser 13 cxb1.2 N-loop SER 269 B VdWContact
Thr 15 cxb1.6 N-loop VAL 270 B VdWContact
Thr 16 cxb1.7 N-loop TYR 127 A Hydrophobic
Thr 16 cxb1.7 N-loop TYR 127 A VdWContact
Gln 17 cxb1.8 N-loop TYR 127 A Hydrophobic
Gln 17 cxb1.8 N-loop TYR 127 A VdWContact
Gln 17 cxb1.8 N-loop GLN 84 A HBAcceptor
Gln 17 cxb1.8 N-loop GLN 84 A VdWContact
Gln 17 cxb1.8 N-loop THR 172 A Hydrophobic
Gln 17 cxb1.8 N-loop THR 172 A VdWContact
Arg 18 cxb1.10 N-loop TYR 125 A Hydrophobic
Arg 18 cxb1.10 N-loop TYR 125 A HBDonor
Arg 18 cxb1.10 N-loop TYR 125 A CationPi
Arg 18 cxb1.10 N-loop TYR 125 A VdWContact
Arg 18 cxb1.10 N-loop LEU 174 A Hydrophobic
Arg 18 cxb1.10 N-loop GLU 123 A Cationic
Leu 19 cxb1.11 N-loop LEU 82 A Hydrophobic
Pro 20 cxb1.14 N-loop LEU 174 A Hydrophobic
Pro 20 cxb1.14 N-loop LEU 174 A VdWContact
Arg 23 B1.1 B1 GLU 80 A HBDonor
Arg 23 B1.1 B1 GLU 80 A Cationic
Arg 23 B1.1 B1 GLU 80 A VdWContact
Ile 38 B2.3 B2 PRO 272 B Hydrophobic
Ile 38 B2.3 B2 PRO 272 B VdWContact
Thr 41 B2.6 B2 LEU 82 A Hydrophobic
Arg 43 b2b3.4 40s-loop GLU 81 A VdWContact
Leu 45 b2b3.12 40s-loop LEU 82 A Hydrophobic
Leu 45 b2b3.12 40s-loop GLU 81 A Hydrophobic
Leu 45 b2b3.12 40s-loop LYS 228 B Hydrophobic
Lys 46 B3.1 B3 SER 271 B HBAcceptor
Lys 46 B3.1 B3 SER 271 B VdWContact
Val 47 B3.2 B3 VAL 270 B Hydrophobic
Val 47 B3.2 B3 VAL 270 B VdWContact
Val 47 B3.2 B3 LEU 82 A Hydrophobic
Cys 48 B3.3 B3 VAL 270 B HBDonor
Cys 48 B3.3 B3 VAL 270 B VdWContact
CHEMOKINE DIAGRAM
T E G S L R 30s-loop K R G L 40s-loop D P Q A 50s-loopC-term D K R T C V S L T T Q R L P V S N-term I T Y T K I R A V I F I T A C V K T W V R D V V R S M D R K S N T R N N
INTERACTION PATTERN SEARCH
0.00 = no similarity, 1.00 = identical