Interactions

2NYZ | XCL1_HUMAN — M3 protein

Residue contacts: 48
SUMMARY
Protein
XCL1_HUMAN View protein entry
Organism
Homo sapiens
UniProt ID
P47992 View on UniProt
PDB ID
2NYZ View on PDB
Method
X-ray
Resolution
2.6 Å
Date
Dec. 25, 2007
Reference
10.1084/JEM.20071677 Open DOI
State
Monomer
Chain information
Chemokine chain
D
Partner chain
A,B
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INTERACTION TABLE
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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Lys 8 NTc.Cm2 N-term ALA 275 A Hydrophobic
Lys 8 NTc.Cm2 N-term ALA 275 A HBAcceptor
Lys 8 NTc.Cm2 N-term ALA 275 A VdWContact
Arg 9 NTc.Cm1 N-term PRO 274 A VdWContact
Arg 9 NTc.Cm1 N-term LEU 273 A VdWContact
Arg 9 NTc.Cm1 N-term PRO 272 A Hydrophobic
Arg 9 NTc.Cm1 N-term PRO 272 A VdWContact
Thr 10 CX.4 CX LEU 273 A HBAcceptor
Thr 10 CX.4 CX LEU 273 A HBDonor
Thr 10 CX.4 CX LEU 273 A VdWContact
Thr 10 CX.4 CX PRO 272 A VdWContact
Val 12 cxb1.1 N-loop TYR 266 A Hydrophobic
Val 12 cxb1.1 N-loop TYR 266 A VdWContact
Val 12 cxb1.1 N-loop LEU 273 A Hydrophobic
Val 12 cxb1.1 N-loop THR 357 A VdWContact
Val 12 cxb1.1 N-loop PRO 360 A Hydrophobic
Ser 13 cxb1.2 N-loop SER 269 A VdWContact
Thr 15 cxb1.6 N-loop VAL 270 A VdWContact
Thr 16 cxb1.7 N-loop TYR 127 B VdWContact
Gln 17 cxb1.8 N-loop GLN 84 B HBDonor
Gln 17 cxb1.8 N-loop GLN 84 B VdWContact
Gln 17 cxb1.8 N-loop THR 172 B Hydrophobic
Gln 17 cxb1.8 N-loop THR 172 B VdWContact
Gln 17 cxb1.8 N-loop TYR 127 B Hydrophobic
Arg 18 cxb1.10 N-loop ASP 141 B Cationic
Arg 18 cxb1.10 N-loop TYR 125 B Hydrophobic
Arg 18 cxb1.10 N-loop TYR 125 B HBDonor
Arg 18 cxb1.10 N-loop TYR 125 B VdWContact
Leu 19 cxb1.11 N-loop LEU 82 B Hydrophobic
Pro 20 cxb1.14 N-loop LEU 174 B Hydrophobic
Pro 20 cxb1.14 N-loop LEU 174 B VdWContact
Pro 20 cxb1.14 N-loop LEU 82 B VdWContact
Arg 23 B1.1 B1 GLU 80 B HBDonor
Arg 23 B1.1 B1 GLU 80 B Cationic
Arg 23 B1.1 B1 GLU 80 B VdWContact
Ile 38 B2.3 B2 PRO 272 A Hydrophobic
Ile 38 B2.3 B2 PRO 272 A VdWContact
Arg 43 b2b3.4 40s-loop GLU 81 B VdWContact
Arg 43 b2b3.4 40s-loop GLU 80 B VdWContact
Leu 45 b2b3.12 40s-loop THR 226 A Hydrophobic
Leu 45 b2b3.12 40s-loop LEU 82 B Hydrophobic
Lys 46 B3.1 B3 SER 271 A HBAcceptor
Lys 46 B3.1 B3 SER 271 A VdWContact
Lys 46 B3.1 B3 PRO 272 A Hydrophobic
Lys 46 B3.1 B3 PRO 272 A VdWContact
Cys 48 B3.3 B3 VAL 270 A HBDonor
Cys 48 B3.3 B3 VAL 270 A VdWContact
Cys 48 B3.3 B3 PRO 272 A VdWContact
CHEMOKINE DIAGRAM
T E G S L R 30s-loop K R G L 40s-loop D P Q A 50s-loopC-term D K R T C V S L T T Q R L P V S N-term I T Y T K I R A V I F I T A C V K T W V R D V V R S M D R K S
INTERACTION PATTERN SEARCH
0.00 = no similarity, 1.00 = identical