Interactions for 5CBE — Binding Partner: E10
Structure details
- PDB ID: 5CBE open_in_new
- Protein: CXCL13_HUMAN
- Organism: Homo sapiens
- UniProt ID: O43927 open_in_new
- Method: X-ray
- Resolution: 2.4 Å
- Date: Nov. 4, 2015
- Reference: 10.1074/JBC.M115.688010 open_in_new
- State: Monomer
- Chemokine Chain: E
- Partner Chain: A,B
Chemokine diagram
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Interactions for this Binding Partner
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Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
---|---|---|---|---|---|
Phe 18 | 74 | N-loop | THR 56 | A | Hydrophobic |
Phe 18 | 74 | N-loop | PHE 54 | A | Hydrophobic |
Phe 18 | 74 | N-loop | PHE 54 | A | VdWContact |
Ile 19 | 75 | N-loop | PHE 54 | A | VdWContact |
Arg 21 | 80 | N-loop | ILE 52 | A | Hydrophobic |
Arg 21 | 80 | N-loop | ASP 97 | A | HBDonor |
Arg 21 | 80 | N-loop | ASP 97 | A | Cationic |
Arg 21 | 80 | N-loop | ASP 97 | A | VdWContact |
Arg 21 | 80 | N-loop | PRO 100 | A | Hydrophobic |
Arg 21 | 80 | N-loop | GLU 95 | A | Cationic |
Arg 21 | 80 | N-loop | GLU 95 | A | VdWContact |
Arg 21 | 80 | N-loop | PRO 96 | A | VdWContact |
Arg 21 | 80 | N-loop | PHE 54 | A | Hydrophobic |
Arg 21 | 80 | N-loop | ILE 100 | A | HBDonor |
Arg 21 | 80 | N-loop | ILE 100 | A | VdWContact |
Arg 22 | 81 | N-loop | ASP 95 | B | HBDonor |
Arg 22 | 81 | N-loop | ASP 95 | B | Cationic |
Arg 22 | 81 | N-loop | ASP 95 | B | VdWContact |
Arg 22 | 81 | N-loop | GLU 95 | A | HBDonor |
Arg 22 | 81 | N-loop | GLU 95 | A | Cationic |
Arg 22 | 81 | N-loop | GLU 95 | A | VdWContact |
Arg 22 | 81 | N-loop | TYR 96 | B | VdWContact |
Arg 22 | 81 | N-loop | ASP 100 | A | HBAcceptor |
Arg 22 | 81 | N-loop | ASP 100 | A | VdWContact |
Phe 23 | 82 | N-loop | LEU 93 | B | VdWContact |
Phe 23 | 82 | N-loop | ASP 95 | B | Hydrophobic |
Phe 23 | 82 | N-loop | TRP 32 | B | Hydrophobic |
Phe 23 | 82 | N-loop | TRP 32 | B | VdWContact |
Phe 23 | 82 | N-loop | TYR 30 | B | Hydrophobic |
Ile 24 | 83 | B1 | PRO 100 | A | Hydrophobic |
Ile 24 | 83 | B1 | PHE 54 | A | Hydrophobic |
Arg 26 | 85 | B1 | TYR 100 | A | Hydrophobic |
Arg 26 | 85 | B1 | TYR 100 | A | VdWContact |
Arg 26 | 85 | B1 | SER 100 | A | HBDonor |
Arg 26 | 85 | B1 | SER 100 | A | VdWContact |
Ile 27 | 86 | B1 | TYR 100 | A | Hydrophobic |
Ile 27 | 86 | B1 | TYR 100 | A | HBAcceptor |
Ile 27 | 86 | B1 | TYR 100 | A | HBDonor |
Ile 27 | 86 | B1 | TYR 100 | A | VdWContact |
Gln 28 | 87 | B1 | SER 100 | A | VdWContact |
Lys 46 | 106 | 40s-loop | TRP 32 | B | Hydrophobic |
Lys 46 | 106 | 40s-loop | TYR 30 | B | Hydrophobic |
Lys 46 | 106 | 40s-loop | ASP 100 | A | VdWContact |
Asn 47 | 112 | 40s-loop | TYR 30 | B | Hydrophobic |
Asn 47 | 112 | 40s-loop | TYR 30 | B | VdWContact |
Trp 59 | 124 | Helix | PHE 54 | A | Hydrophobic |
Arg 62 | 127 | Helix | GLU 73 | A | Cationic |
Met 63 | 128 | Helix | PHE 54 | A | Hydrophobic |
Met 63 | 128 | Helix | ILE 53 | A | Hydrophobic |