Interactions for 5CBE — Binding Partner: CXCL13


Structure details

  • Chemokine Chain: E
  • Partner Chain: F
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Chemokine diagram

P R G N G C P R K E 30s-loop K N K S 40s-loop D P Q A 50s-loopC-term Y Y T S L R C R C V Q E S S V F I P R R F N-term L I Q I R D I I I V W K V C V I E W I Q R M M E V
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Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Tyr 3 57 N-term LYS 48 F Hydrophobic
Tyr 4 58 N-term ILE 50 F HBAcceptor
Tyr 4 58 N-term ILE 50 F VdWContact
Tyr 4 58 N-term VAL 51 F Hydrophobic
Tyr 4 58 N-term SER 49 F VdWContact
Thr 5 59 N-term ILE 50 F Hydrophobic
Thr 5 59 N-term ILE 50 F VdWContact
Ser 6 60 N-term CYS 11 F VdWContact
Ser 6 60 N-term ILE 50 F HBDonor
Ser 6 60 N-term ILE 50 F VdWContact
Ser 6 60 N-term VAL 12 F HBAcceptor
Ser 6 60 N-term VAL 12 F VdWContact
Leu 7 61 N-term ILE 42 F Hydrophobic
Leu 7 61 N-term ARG 10 F Hydrophobic
Leu 7 61 N-term ARG 10 F VdWContact
Leu 7 61 N-term ILE 50 F Hydrophobic
Arg 8 62 N-term ARG 10 F HBDonor
Arg 8 62 N-term ARG 10 F VdWContact
Arg 8 62 N-term CYS 9 F HBDonor
Arg 8 62 N-term CYS 9 F VdWContact
Arg 8 62 N-term VAL 12 F Hydrophobic
Arg 8 62 N-term VAL 12 F VdWContact
Arg 8 62 N-term ARG 8 F VdWContact
Cys 9 63 CX ARG 8 F HBAcceptor
Cys 9 63 CX ARG 8 F VdWContact
Arg 10 66 CX ARG 10 F Hydrophobic
Arg 10 66 CX GLU 40 F Cationic
Arg 10 66 CX LEU 30 F VdWContact
Arg 10 66 CX CYS 36 F Cationic
Arg 10 66 CX LEU 7 F Hydrophobic
Arg 10 66 CX LEU 7 F VdWContact
Arg 10 66 CX ARG 8 F HBAcceptor
Arg 10 66 CX ARG 8 F HBDonor
Arg 10 66 CX ARG 8 F VdWContact
Val 12 68 N-loop ARG 8 F Hydrophobic
Leu 30 89 B1 ARG 10 F VdWContact
Ile 42 102 B2 LEU 7 F Hydrophobic
Ile 50 115 B3 THR 5 F Hydrophobic
Ile 50 115 B3 THR 5 F VdWContact
Ile 50 115 B3 LEU 7 F Hydrophobic

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