Interactions for 5CBE — Binding Partner: CXCL13


Structure details

  • Chemokine Chain: F
  • Partner Chain: E
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Chemokine diagram

P R G N G C P R K E 30s-loop K N K S 40s-loop D P Q A 50s-loopC-term T S L R C R C V Q E S S V F I P R R F N-term L I Q I R D I I I V W K V C V I E W I Q R M M E V L R K R
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Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Thr 5 59 N-term ILE 50 E Hydrophobic
Thr 5 59 N-term ILE 50 E VdWContact
Leu 7 61 N-term ILE 50 E Hydrophobic
Leu 7 61 N-term ARG 10 E Hydrophobic
Leu 7 61 N-term ARG 10 E VdWContact
Leu 7 61 N-term ILE 42 E Hydrophobic
Arg 8 62 N-term ARG 10 E HBAcceptor
Arg 8 62 N-term ARG 10 E HBDonor
Arg 8 62 N-term ARG 10 E VdWContact
Arg 8 62 N-term ARG 8 E VdWContact
Arg 8 62 N-term CYS 9 E HBDonor
Arg 8 62 N-term CYS 9 E VdWContact
Arg 8 62 N-term VAL 12 E Hydrophobic
Cys 9 63 CX ARG 8 E HBAcceptor
Cys 9 63 CX ARG 8 E VdWContact
Arg 10 66 CX ARG 10 E Hydrophobic
Arg 10 66 CX LEU 30 E VdWContact
Arg 10 66 CX ARG 8 E HBAcceptor
Arg 10 66 CX ARG 8 E VdWContact
Arg 10 66 CX LEU 7 E Hydrophobic
Arg 10 66 CX LEU 7 E VdWContact
Cys 11 67 CX SER 6 E VdWContact
Val 12 68 N-loop ARG 8 E Hydrophobic
Val 12 68 N-loop ARG 8 E VdWContact
Val 12 68 N-loop SER 6 E HBDonor
Val 12 68 N-loop SER 6 E VdWContact
Leu 30 89 B1 ARG 10 E VdWContact
Cys 36 95 30s-loop ARG 10 E Anionic
Glu 40 100 30s-loop ARG 10 E Anionic
Ile 42 102 B2 LEU 7 E Hydrophobic
Lys 48 113 40s-loop TYR 3 E Hydrophobic
Ser 49 114 40s-loop TYR 4 E VdWContact
Ile 50 115 B3 TYR 4 E HBDonor
Ile 50 115 B3 TYR 4 E VdWContact
Ile 50 115 B3 THR 5 E Hydrophobic
Ile 50 115 B3 THR 5 E VdWContact
Ile 50 115 B3 LEU 7 E Hydrophobic
Ile 50 115 B3 SER 6 E HBAcceptor
Ile 50 115 B3 SER 6 E VdWContact
Val 51 116 B3 TYR 4 E Hydrophobic

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