Interactions for 6LFM — Binding Partner: CXCR2
Structure details
- PDB ID: 6LFM open_in_new
- Protein: CXCL8_HUMAN
- Organism: Homo sapiens
- UniProt ID: P10145 open_in_new
- Method: Cryo-em
- Resolution: 3.5 Å
- Date: Sept. 2, 2020
- Reference: 10.1038/S41586-020-2492-5 open_in_new
- State: Dimer
- Chemokine Chain: D
- Partner Chain: R
Chemokine diagram
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Interactions for this Binding Partner
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Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
---|---|---|---|---|---|
Ala 2 | 58 | N-term | VAL 192 | R | Hydrophobic |
Lys 3 | 59 | N-term | ASP 293 | R | VdWContact |
Lys 3 | 59 | N-term | TYR 197 | R | HBAcceptor |
Lys 3 | 59 | N-term | TYR 197 | R | VdWContact |
Lys 3 | 59 | N-term | LEU 296 | R | Hydrophobic |
Lys 3 | 59 | N-term | LEU 296 | R | VdWContact |
Lys 3 | 59 | N-term | GLU 300 | R | Cationic |
Glu 4 | 60 | N-term | TYR 197 | R | VdWContact |
Glu 4 | 60 | N-term | LEU 296 | R | Hydrophobic |
Glu 4 | 60 | N-term | ARG 278 | R | VdWContact |
Glu 4 | 60 | N-term | ARG 289 | R | HBAcceptor |
Glu 4 | 60 | N-term | ARG 289 | R | VdWContact |
Glu 4 | 60 | N-term | ARG 208 | R | HBAcceptor |
Glu 4 | 60 | N-term | ARG 208 | R | Anionic |
Glu 4 | 60 | N-term | ARG 208 | R | VdWContact |
Leu 5 | 61 | N-term | TYR 197 | R | Hydrophobic |
Leu 5 | 61 | N-term | TYR 197 | R | HBDonor |
Leu 5 | 61 | N-term | TYR 197 | R | VdWContact |
Leu 5 | 61 | N-term | VAL 192 | R | Hydrophobic |
Leu 5 | 61 | N-term | VAL 192 | R | VdWContact |
Arg 6 | 62 | N-term | ARG 289 | R | Hydrophobic |
Arg 6 | 62 | N-term | ARG 289 | R | HBAcceptor |
Arg 6 | 62 | N-term | ARG 289 | R | VdWContact |
Gln 8 | 66 | CX | PRO 38 | R | Hydrophobic |
Gln 8 | 66 | CX | PRO 38 | R | VdWContact |
Gln 8 | 66 | CX | ASN 191 | R | HBAcceptor |
Gln 8 | 66 | CX | ASN 191 | R | VdWContact |
Lys 11 | 69 | N-loop | ALA 36 | R | Hydrophobic |
Tyr 13 | 71 | N-loop | LEU 34 | R | Hydrophobic |
Tyr 13 | 71 | N-loop | LEU 34 | R | VdWContact |
Lys 15 | 73 | N-loop | LEU 29 | R | Hydrophobic |
Phe 17 | 75 | N-loop | LEU 29 | R | Hydrophobic |
His 18 | 76 | N-loop | THR 28 | R | Hydrophobic |
His 18 | 76 | N-loop | THR 28 | R | VdWContact |
Phe 21 | 82 | N-loop | PHE 32 | R | Hydrophobic |
Gly 31 | 92 | 30s-loop | THR 204 | R | VdWContact |
Gly 31 | 92 | 30s-loop | GLY 201 | R | VdWContact |
Pro 32 | 93 | 30s-loop | VAL 187 | R | Hydrophobic |
Pro 32 | 93 | 30s-loop | THR 204 | R | VdWContact |
Ile 40 | 102 | B2 | PRO 38 | R | Hydrophobic |
Arg 47 | 114 | 40s-loop | PHE 32 | R | Hydrophobic |
Glu 48 | 115 | B3 | ALA 37 | R | Hydrophobic |
Glu 48 | 115 | B3 | ALA 37 | R | VdWContact |
Glu 48 | 115 | B3 | PRO 38 | R | Hydrophobic |
Glu 48 | 115 | B3 | PRO 38 | R | VdWContact |