Interactions for 2NYZ — Binding Partner: M3 protein
Structure details
- PDB ID: 2NYZ open_in_new
- Protein: XCL1_HUMAN
- Organism: Homo sapiens
- UniProt ID: P47992 open_in_new
- Method: X-ray
- Resolution: 2.6 Å
- Date: Dec. 25, 2007
- Reference: 10.1084/JEM.20071677 open_in_new
- State: Monomer
- Chemokine Chain: D
- Partner Chain: A,B
Chemokine diagram
Interactions for this Binding Partner
Download list as CSV
| Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
|---|---|---|---|---|---|
| Lys 8 | NTc.Cm2 | N-term | ALA 275 | A | Hydrophobic |
| Lys 8 | NTc.Cm2 | N-term | ALA 275 | A | HBAcceptor |
| Lys 8 | NTc.Cm2 | N-term | ALA 275 | A | VdWContact |
| Arg 9 | NTc.Cm1 | N-term | PRO 274 | A | VdWContact |
| Arg 9 | NTc.Cm1 | N-term | LEU 273 | A | VdWContact |
| Arg 9 | NTc.Cm1 | N-term | PRO 272 | A | Hydrophobic |
| Arg 9 | NTc.Cm1 | N-term | PRO 272 | A | VdWContact |
| Thr 10 | CX.4 | CX | LEU 273 | A | HBAcceptor |
| Thr 10 | CX.4 | CX | LEU 273 | A | HBDonor |
| Thr 10 | CX.4 | CX | LEU 273 | A | VdWContact |
| Thr 10 | CX.4 | CX | PRO 272 | A | VdWContact |
| Val 12 | cxb1.1 | N-loop | TYR 266 | A | Hydrophobic |
| Val 12 | cxb1.1 | N-loop | TYR 266 | A | VdWContact |
| Val 12 | cxb1.1 | N-loop | LEU 273 | A | Hydrophobic |
| Val 12 | cxb1.1 | N-loop | THR 357 | A | VdWContact |
| Val 12 | cxb1.1 | N-loop | PRO 360 | A | Hydrophobic |
| Ser 13 | cxb1.2 | N-loop | SER 269 | A | VdWContact |
| Thr 15 | cxb1.6 | N-loop | VAL 270 | A | VdWContact |
| Thr 16 | cxb1.7 | N-loop | TYR 127 | B | VdWContact |
| Gln 17 | cxb1.8 | N-loop | GLN 84 | B | HBDonor |
| Gln 17 | cxb1.8 | N-loop | GLN 84 | B | VdWContact |
| Gln 17 | cxb1.8 | N-loop | THR 172 | B | Hydrophobic |
| Gln 17 | cxb1.8 | N-loop | THR 172 | B | VdWContact |
| Gln 17 | cxb1.8 | N-loop | TYR 127 | B | Hydrophobic |
| Arg 18 | cxb1.10 | N-loop | ASP 141 | B | Cationic |
| Arg 18 | cxb1.10 | N-loop | TYR 125 | B | Hydrophobic |
| Arg 18 | cxb1.10 | N-loop | TYR 125 | B | HBDonor |
| Arg 18 | cxb1.10 | N-loop | TYR 125 | B | VdWContact |
| Leu 19 | cxb1.11 | N-loop | LEU 82 | B | Hydrophobic |
| Pro 20 | cxb1.14 | N-loop | LEU 174 | B | Hydrophobic |
| Pro 20 | cxb1.14 | N-loop | LEU 174 | B | VdWContact |
| Pro 20 | cxb1.14 | N-loop | LEU 82 | B | VdWContact |
| Arg 23 | B1.1 | B1 | GLU 80 | B | HBDonor |
| Arg 23 | B1.1 | B1 | GLU 80 | B | Cationic |
| Arg 23 | B1.1 | B1 | GLU 80 | B | VdWContact |
| Ile 38 | B2.3 | B2 | PRO 272 | A | Hydrophobic |
| Ile 38 | B2.3 | B2 | PRO 272 | A | VdWContact |
| Arg 43 | b2b3.4 | 40s-loop | GLU 81 | B | VdWContact |
| Arg 43 | b2b3.4 | 40s-loop | GLU 80 | B | VdWContact |
| Leu 45 | b2b3.12 | 40s-loop | THR 226 | A | Hydrophobic |
| Leu 45 | b2b3.12 | 40s-loop | LEU 82 | B | Hydrophobic |
| Lys 46 | B3.1 | B3 | SER 271 | A | HBAcceptor |
| Lys 46 | B3.1 | B3 | SER 271 | A | VdWContact |
| Lys 46 | B3.1 | B3 | PRO 272 | A | Hydrophobic |
| Lys 46 | B3.1 | B3 | PRO 272 | A | VdWContact |
| Cys 48 | B3.3 | B3 | VAL 270 | A | HBDonor |
| Cys 48 | B3.3 | B3 | VAL 270 | A | VdWContact |
| Cys 48 | B3.3 | B3 | PRO 272 | A | VdWContact |
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