Interactions

5CMD | CCL5_HUMAN — CCL5

Residue contacts: 64
SUMMARY
Protein
CCL5_HUMAN View protein entry
Organism
Homo sapiens
UniProt ID
P13501 View on UniProt
PDB ID
5CMD View on PDB
Method
X-ray
Resolution
3.09 Å
Date
April 13, 2016
Reference
10.1073/PNAS.1523981113 Open DOI
State
Oligomer
Chain information
Chemokine chain
D
Partner chain
A,B,C,E,F
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INTERACTION TABLE
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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Ser 5 NTc.Cm5 N-term VAL 49 C VdWContact
Ser 5 NTc.Cm5 N-term SER 31 E VdWContact
Ser 5 NTc.Cm5 N-term GLY 32 E VdWContact
Ser 5 NTc.Cm5 N-term GLN 48 C VdWContact
Thr 7 NTc.Cm3 N-term CYS 10 C VdWContact
Thr 7 NTc.Cm3 N-term VAL 40 C Hydrophobic
Thr 7 NTc.Cm3 N-term PRO 9 C Hydrophobic
Thr 7 NTc.Cm3 N-term PRO 9 C VdWContact
Thr 8 NTc.Cm2 N-term CYS 10 C HBAcceptor
Thr 8 NTc.Cm2 N-term CYS 10 C HBDonor
Thr 8 NTc.Cm2 N-term CYS 10 C VdWContact
Thr 8 NTc.Cm2 N-term PHE 12 C Hydrophobic
Thr 8 NTc.Cm2 N-term PHE 12 C VdWContact
Pro 9 NTc.Cm1 N-term THR 7 C Hydrophobic
Cys 10 CX.1 CX THR 8 C HBAcceptor
Cys 10 CX.1 CX THR 8 C HBDonor
Cys 10 CX.1 CX THR 8 C VdWContact
Cys 10 CX.1 CX THR 7 C VdWContact
Phe 12 cxb1.1 N-loop LYS 33 B HBAcceptor
Phe 12 cxb1.1 N-loop LYS 33 B VdWContact
Phe 12 cxb1.1 N-loop THR 8 C VdWContact
Phe 12 cxb1.1 N-loop LYS 33 C Hydrophobic
Ala 13 cxb1.2 N-loop LYS 33 B Hydrophobic
Leu 19 cxb1.11 N-loop TYR 29 B Hydrophobic
Leu 19 cxb1.11 N-loop TYR 29 B VdWContact
Ala 22 cxb1.16 N-loop MET 67 B Hydrophobic
His 23 B1.1 B1 MET 67 B Hydrophobic
His 23 B1.1 B1 ASN 63 B Hydrophobic
His 23 B1.1 B1 ASN 63 B HBDonor
His 23 B1.1 B1 ASN 63 B VdWContact
His 23 B1.1 B1 ILE 62 B Hydrophobic
His 23 B1.1 B1 GLU 66 B Hydrophobic
His 23 B1.1 B1 GLU 66 B VdWContact
Glu 26 B1.4 B1 ARG 47 F Anionic
Glu 26 B1.4 B1 ARG 47 F VdWContact
Tyr 27 B1.5 B1 ARG 47 F Hydrophobic
Tyr 27 B1.5 B1 ARG 47 F HBAcceptor
Tyr 27 B1.5 B1 ARG 47 F VdWContact
Tyr 29 B1.7 B1 VAL 49 F Hydrophobic
Lys 33 b1b2.10 30s-loop ALA 13 F Hydrophobic
Lys 33 b1b2.10 30s-loop PHE 12 C Hydrophobic
Val 40 B2.3 B2 THR 7 C Hydrophobic
Thr 43 B2.6 B2 GLU 66 B VdWContact
Lys 45 b2b3.4 40s-loop GLU 66 B Hydrophobic
Arg 47 b2b3.12 40s-loop GLU 26 B Cationic
Gln 48 B3.1 B3 ASP 6 C HBAcceptor
Gln 48 B3.1 B3 ASP 6 C VdWContact
Gln 48 B3.1 B3 SER 5 C HBDonor
Gln 48 B3.1 B3 SER 5 C VdWContact
Cys 50 B3.3 B3 ASP 6 C Hydrophobic
Cys 50 B3.3 B3 ASP 6 C HBDonor
Cys 50 B3.3 B3 ASP 6 C VdWContact
Ile 62 H.7 Helix HIS 23 F Hydrophobic
Asn 63 H.8 Helix HIS 23 F Hydrophobic
Asn 63 H.8 Helix HIS 23 F VdWContact
Leu 65 H.10 Helix LYS 45 F Hydrophobic
Leu 65 H.10 Helix LYS 45 F VdWContact
Glu 66 CT.1 C-term HIS 23 F Hydrophobic
Glu 66 CT.1 C-term HIS 23 F VdWContact
Glu 66 CT.1 C-term LYS 45 F HBAcceptor
Glu 66 CT.1 C-term LYS 45 F VdWContact
Glu 66 CT.1 C-term THR 43 F HBAcceptor
Glu 66 CT.1 C-term THR 43 F VdWContact
Met 67 CT.2 C-term HIS 23 F Hydrophobic
CHEMOKINE DIAGRAM
T S G K C S N P 30s-loop R K N R 40s-loop N P E K 50s-loopC-term S D T T P C C F A Y I A R P L P R A N-term Y F Y E K I H A V V F V T A C V Q K W V R E Y I N S L E M S
INTERACTION PATTERN SEARCH
0.00 = no similarity, 1.00 = identical