Interactions for 1PFN — Binding Partner: CXCL4


Structure details

  • Chemokine Chain: B
  • Partner Chain: A,C,D
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Chemokine diagram

K A G P H C P T A Q 30s-loop K N G R 40s-loop D L Q A 50s-loopC-term M S A K E L R C Q C V K T T S Q V R P R H N-term I V E L S T I L I A T L L C I K P L Y K K I I K K L L E S
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Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Gln 9 62 N-term THR 16 D VdWContact
Leu 11 66 CX GLN 11 D Hydrophobic
Leu 11 66 CX GLN 11 D HBDonor
Leu 11 66 CX GLN 11 D VdWContact
Thr 25 84 B1 GLY 48 C HBDonor
Thr 25 84 B1 GLY 48 C VdWContact
Ser 26 85 B1 VAL 29 A VdWContact
Ser 26 85 B1 ILE 30 A VdWContact
Leu 27 86 B1 VAL 29 A Hydrophobic
Leu 27 86 B1 VAL 29 A HBAcceptor
Leu 27 86 B1 VAL 29 A VdWContact
Val 29 88 B1 LEU 67 A Hydrophobic
Val 29 88 B1 SER 26 A VdWContact
Ile 30 89 B1 SER 26 A VdWContact
Ile 30 89 B1 THR 25 A VdWContact
Lys 31 90 30s-loop LEU 67 A Hydrophobic
Lys 31 90 30s-loop LEU 67 A VdWContact
Lys 31 90 30s-loop SER 70 A VdWContact
Lys 46 106 40s-loop GLY 48 C HBAcceptor
Lys 46 106 40s-loop GLY 48 C VdWContact
Gly 48 113 40s-loop GLY 48 C VdWContact
Gly 48 113 40s-loop LYS 46 C HBDonor
Gly 48 113 40s-loop LYS 46 C VdWContact
Arg 49 114 40s-loop HIS 35 D Hydrophobic
Arg 49 114 40s-loop HIS 35 D VdWContact
Lys 50 115 B3 ARG 9 D VdWContact
Leu 55 120 50s-loop ILE 64 A Hydrophobic
Leu 55 120 50s-loop LEU 68 A Hydrophobic
Tyr 60 125 Helix LEU 68 A VdWContact
Ile 64 129 Helix ILE 64 A Hydrophobic
Leu 67 132 Helix VAL 29 A Hydrophobic
Leu 67 132 Helix VAL 29 A VdWContact
Leu 67 132 Helix LEU 55 A Hydrophobic
Leu 67 132 Helix LYS 31 A Hydrophobic
Leu 67 132 Helix LYS 31 A VdWContact
Leu 68 133 Helix TYR 60 A VdWContact
Leu 68 133 Helix LEU 55 A Hydrophobic
Leu 68 133 Helix LEU 55 A VdWContact
Ser 70 135 Helix LYS 31 A VdWContact

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