Interactions for 5CBE — Binding Partner: CXCL13
Structure details
- PDB ID: 5CBE open_in_new
- Protein: CXCL13_HUMAN
- Organism: Homo sapiens
- UniProt ID: O43927 open_in_new
- Method: X-ray
- Resolution: 2.4 Å
- Date: Nov. 4, 2015
- Reference: 10.1074/JBC.M115.688010 open_in_new
- State: Dimer
- Chemokine Chain: E
- Partner Chain: F
Chemokine diagram
Interactions for this Binding Partner
Download list as CSV
| Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
|---|---|---|---|---|---|
| Tyr 3 | NTc.Cm6 | N-term | LYS 48 | F | Hydrophobic |
| Tyr 4 | NTc.Cm5 | N-term | ILE 50 | F | HBAcceptor |
| Tyr 4 | NTc.Cm5 | N-term | ILE 50 | F | VdWContact |
| Tyr 4 | NTc.Cm5 | N-term | VAL 51 | F | Hydrophobic |
| Tyr 4 | NTc.Cm5 | N-term | SER 49 | F | VdWContact |
| Thr 5 | NTc.Cm4 | N-term | ILE 50 | F | Hydrophobic |
| Thr 5 | NTc.Cm4 | N-term | ILE 50 | F | VdWContact |
| Ser 6 | NTc.Cm3 | N-term | CYS 11 | F | VdWContact |
| Ser 6 | NTc.Cm3 | N-term | ILE 50 | F | HBDonor |
| Ser 6 | NTc.Cm3 | N-term | ILE 50 | F | VdWContact |
| Ser 6 | NTc.Cm3 | N-term | VAL 12 | F | HBAcceptor |
| Ser 6 | NTc.Cm3 | N-term | VAL 12 | F | VdWContact |
| Leu 7 | NTc.Cm2 | N-term | ILE 42 | F | Hydrophobic |
| Leu 7 | NTc.Cm2 | N-term | ARG 10 | F | Hydrophobic |
| Leu 7 | NTc.Cm2 | N-term | ARG 10 | F | VdWContact |
| Leu 7 | NTc.Cm2 | N-term | ILE 50 | F | Hydrophobic |
| Arg 8 | NTc.Cm1 | N-term | ARG 10 | F | HBDonor |
| Arg 8 | NTc.Cm1 | N-term | ARG 10 | F | VdWContact |
| Arg 8 | NTc.Cm1 | N-term | CYS 9 | F | HBDonor |
| Arg 8 | NTc.Cm1 | N-term | CYS 9 | F | VdWContact |
| Arg 8 | NTc.Cm1 | N-term | VAL 12 | F | Hydrophobic |
| Arg 8 | NTc.Cm1 | N-term | VAL 12 | F | VdWContact |
| Arg 8 | NTc.Cm1 | N-term | ARG 8 | F | VdWContact |
| Cys 9 | CX.1 | CX | ARG 8 | F | HBAcceptor |
| Cys 9 | CX.1 | CX | ARG 8 | F | VdWContact |
| Arg 10 | CX.4 | CX | ARG 10 | F | Hydrophobic |
| Arg 10 | CX.4 | CX | GLU 40 | F | Cationic |
| Arg 10 | CX.4 | CX | LEU 30 | F | VdWContact |
| Arg 10 | CX.4 | CX | CYS 36 | F | Cationic |
| Arg 10 | CX.4 | CX | LEU 7 | F | Hydrophobic |
| Arg 10 | CX.4 | CX | LEU 7 | F | VdWContact |
| Arg 10 | CX.4 | CX | ARG 8 | F | HBAcceptor |
| Arg 10 | CX.4 | CX | ARG 8 | F | HBDonor |
| Arg 10 | CX.4 | CX | ARG 8 | F | VdWContact |
| Val 12 | cxb1.1 | N-loop | ARG 8 | F | Hydrophobic |
| Leu 30 | b1b2.4 | 30s-loop | ARG 10 | F | VdWContact |
| Ile 42 | B2.3 | B2 | LEU 7 | F | Hydrophobic |
| Ile 50 | B3.1 | B3 | THR 5 | F | Hydrophobic |
| Ile 50 | B3.1 | B3 | THR 5 | F | VdWContact |
| Ile 50 | B3.1 | B3 | LEU 7 | F | Hydrophobic |
, 'snake_.png', {scale: 3});){kind=link}
, 'snake_.jpg', {scale: 3});){kind=link}