Interactions for 5CBE — Binding Partner: E10
Structure details
- PDB ID: 5CBE open_in_new
- Protein: CXCL13_HUMAN
- Organism: Homo sapiens
- UniProt ID: O43927 open_in_new
- Method: X-ray
- Resolution: 2.4 Å
- Date: Nov. 4, 2015
- Reference: 10.1074/JBC.M115.688010 open_in_new
- State: Dimer
- Chemokine Chain: F
- Partner Chain: C,D
Interactions for this Binding Partner
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| Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
|---|---|---|---|---|---|
Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
|---|---|---|---|---|---|
| Arg 21 | cxb1.15 | N-loop | PRO 96 | C | VdWContact |
| Arg 21 | cxb1.15 | N-loop | ILE 52 | C | Hydrophobic |
| Arg 21 | cxb1.15 | N-loop | PRO 100 | C | Hydrophobic |
| Arg 21 | cxb1.15 | N-loop | ILE 100 | C | HBDonor |
| Arg 21 | cxb1.15 | N-loop | ILE 100 | C | VdWContact |
| Arg 21 | cxb1.15 | N-loop | GLU 95 | C | Cationic |
| Arg 21 | cxb1.15 | N-loop | GLU 95 | C | VdWContact |
| Arg 21 | cxb1.15 | N-loop | ASP 97 | C | HBDonor |
| Arg 21 | cxb1.15 | N-loop | ASP 97 | C | Cationic |
| Arg 21 | cxb1.15 | N-loop | ASP 97 | C | VdWContact |
| Arg 22 | cxb1.16 | N-loop | ASP 95 | D | Cationic |
| Arg 22 | cxb1.16 | N-loop | ASP 95 | D | VdWContact |
| Arg 22 | cxb1.16 | N-loop | GLU 95 | C | Cationic |
| Arg 22 | cxb1.16 | N-loop | GLU 95 | C | VdWContact |
| Arg 22 | cxb1.16 | N-loop | ASP 100 | C | HBAcceptor |
| Arg 22 | cxb1.16 | N-loop | ASP 100 | C | VdWContact |
| Arg 26 | B1.4 | B1 | SER 100 | C | HBDonor |
| Arg 26 | B1.4 | B1 | SER 100 | C | VdWContact |
| Arg 26 | B1.4 | B1 | TYR 100 | C | Hydrophobic |
| Arg 26 | B1.4 | B1 | TYR 100 | C | VdWContact |
| Arg 62 | H.5 | Helix | ILE 53 | C | VdWContact |
| Arg 62 | H.5 | Helix | GLU 73 | C | Cationic |
| Arg 70 | CT.4 | C-term | TYR 99 | C | VdWContact |
| Asn 47 | b2b3.4 | 40s-loop | TYR 30 | D | Hydrophobic |
| Asn 47 | b2b3.4 | 40s-loop | TYR 30 | D | VdWContact |
| Ile 24 | B1.2 | B1 | PRO 100 | C | Hydrophobic |
| Ile 27 | B1.5 | B1 | TYR 100 | C | Hydrophobic |
| Ile 27 | B1.5 | B1 | TYR 100 | C | HBAcceptor |
| Ile 27 | B1.5 | B1 | TYR 100 | C | HBDonor |
| Ile 27 | B1.5 | B1 | TYR 100 | C | VdWContact |
| Leu 67 | CT.1 | C-term | TYR 100 | C | Hydrophobic |
| Leu 67 | CT.1 | C-term | TYR 99 | C | Hydrophobic |
| Lys 46 | b2b3.2 | 40s-loop | TYR 30 | D | Hydrophobic |
| Lys 46 | b2b3.2 | 40s-loop | ASP 100 | C | HBDonor |
| Lys 46 | b2b3.2 | 40s-loop | ASP 100 | C | VdWContact |
| Lys 46 | b2b3.2 | 40s-loop | TRP 32 | D | Hydrophobic |
| Lys 69 | CT.3 | C-term | PHE 29 | C | Hydrophobic |
| Lys 69 | CT.3 | C-term | PHE 29 | C | VdWContact |
| Lys 69 | CT.3 | C-term | TYR 99 | C | VdWContact |
| Met 63 | H.6 | Helix | PHE 54 | C | Hydrophobic |
| Met 63 | H.6 | Helix | PHE 54 | C | VdWContact |
| Met 63 | H.6 | Helix | TYR 100 | C | Hydrophobic |
| Phe 18 | cxb1.10 | N-loop | PHE 54 | C | Hydrophobic |
| Phe 23 | B1.1 | B1 | LEU 93 | D | VdWContact |
| Phe 23 | B1.1 | B1 | TRP 32 | D | Hydrophobic |
| Phe 23 | B1.1 | B1 | ASP 95 | D | Hydrophobic |
| Trp 59 | H.2 | Helix | PHE 54 | C | Hydrophobic |
| Trp 59 | H.2 | Helix | PHE 54 | C | VdWContact |
| Val 66 | H.9 | Helix | SER 31 | C | VdWContact |
| Val 66 | H.9 | Helix | ILE 53 | C | Hydrophobic |
Showing 1 to 50 of 50 entries
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