Interactions for 5CBE — Binding Partner: CXCL13
Structure details
- PDB ID: 5CBE open_in_new
- Protein: CXCL13_HUMAN
- Organism: Homo sapiens
- UniProt ID: O43927 open_in_new
- Method: X-ray
- Resolution: 2.4 Å
- Date: Nov. 4, 2015
- Reference: 10.1074/JBC.M115.688010 open_in_new
- State: Dimer
- Chemokine Chain: F
- Partner Chain: E
Chemokine diagram
Interactions for this Binding Partner
Download list as CSV
| Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
|---|---|---|---|---|---|
| Thr 5 | NTc.Cm4 | N-term | ILE 50 | E | Hydrophobic |
| Thr 5 | NTc.Cm4 | N-term | ILE 50 | E | VdWContact |
| Leu 7 | NTc.Cm2 | N-term | ILE 50 | E | Hydrophobic |
| Leu 7 | NTc.Cm2 | N-term | ARG 10 | E | Hydrophobic |
| Leu 7 | NTc.Cm2 | N-term | ARG 10 | E | VdWContact |
| Leu 7 | NTc.Cm2 | N-term | ILE 42 | E | Hydrophobic |
| Arg 8 | NTc.Cm1 | N-term | ARG 10 | E | HBAcceptor |
| Arg 8 | NTc.Cm1 | N-term | ARG 10 | E | HBDonor |
| Arg 8 | NTc.Cm1 | N-term | ARG 10 | E | VdWContact |
| Arg 8 | NTc.Cm1 | N-term | ARG 8 | E | VdWContact |
| Arg 8 | NTc.Cm1 | N-term | CYS 9 | E | HBDonor |
| Arg 8 | NTc.Cm1 | N-term | CYS 9 | E | VdWContact |
| Arg 8 | NTc.Cm1 | N-term | VAL 12 | E | Hydrophobic |
| Cys 9 | CX.1 | CX | ARG 8 | E | HBAcceptor |
| Cys 9 | CX.1 | CX | ARG 8 | E | VdWContact |
| Arg 10 | CX.4 | CX | ARG 10 | E | Hydrophobic |
| Arg 10 | CX.4 | CX | LEU 30 | E | VdWContact |
| Arg 10 | CX.4 | CX | ARG 8 | E | HBAcceptor |
| Arg 10 | CX.4 | CX | ARG 8 | E | VdWContact |
| Arg 10 | CX.4 | CX | LEU 7 | E | Hydrophobic |
| Arg 10 | CX.4 | CX | LEU 7 | E | VdWContact |
| Cys 11 | CX.5 | CX | SER 6 | E | VdWContact |
| Val 12 | cxb1.1 | N-loop | ARG 8 | E | Hydrophobic |
| Val 12 | cxb1.1 | N-loop | ARG 8 | E | VdWContact |
| Val 12 | cxb1.1 | N-loop | SER 6 | E | HBDonor |
| Val 12 | cxb1.1 | N-loop | SER 6 | E | VdWContact |
| Leu 30 | b1b2.4 | 30s-loop | ARG 10 | E | VdWContact |
| Cys 36 | b1b2.12 | 30s-loop | ARG 10 | E | Anionic |
| Glu 40 | B2.1 | B2 | ARG 10 | E | Anionic |
| Ile 42 | B2.3 | B2 | LEU 7 | E | Hydrophobic |
| Lys 48 | b2b3.11 | 40s-loop | TYR 3 | E | Hydrophobic |
| Ser 49 | b2b3.12 | 40s-loop | TYR 4 | E | VdWContact |
| Ile 50 | B3.1 | B3 | TYR 4 | E | HBDonor |
| Ile 50 | B3.1 | B3 | TYR 4 | E | VdWContact |
| Ile 50 | B3.1 | B3 | THR 5 | E | Hydrophobic |
| Ile 50 | B3.1 | B3 | THR 5 | E | VdWContact |
| Ile 50 | B3.1 | B3 | LEU 7 | E | Hydrophobic |
| Ile 50 | B3.1 | B3 | SER 6 | E | HBAcceptor |
| Ile 50 | B3.1 | B3 | SER 6 | E | VdWContact |
| Val 51 | B3.2 | B3 | TYR 4 | E | Hydrophobic |
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