Interactions for 5CMD — Binding Partner: CCL5


Structure details

  • Chemokine Chain: C
  • Partner Chain: A,B,D,E,F
Download PDB

3D view

NGL viewer powered by MMTF.


Chemokine diagram

T S G K C S N P 30s-loop R K N R 40s-loop N P E K 50s-loopC-term S D T T P C C F A Y I A R P L P R A N-term Y F Y E K I H A V V F V T A C V Q K W V R E Y I N S L E M S

Interactions for this Binding Partner

Download list as CSV
Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Ser 5 NTc.Cm5 N-term GLN 48 D HBAcceptor
Ser 5 NTc.Cm5 N-term GLN 48 D VdWContact
Asp 6 NTc.Cm4 N-term CYS 50 D Hydrophobic
Asp 6 NTc.Cm4 N-term CYS 50 D HBAcceptor
Asp 6 NTc.Cm4 N-term CYS 50 D VdWContact
Asp 6 NTc.Cm4 N-term GLN 48 D HBDonor
Asp 6 NTc.Cm4 N-term GLN 48 D VdWContact
Thr 7 NTc.Cm3 N-term CYS 10 D VdWContact
Thr 7 NTc.Cm3 N-term PRO 9 D Hydrophobic
Thr 7 NTc.Cm3 N-term VAL 40 D Hydrophobic
Thr 8 NTc.Cm2 N-term PHE 12 D VdWContact
Thr 8 NTc.Cm2 N-term CYS 10 D HBAcceptor
Thr 8 NTc.Cm2 N-term CYS 10 D HBDonor
Thr 8 NTc.Cm2 N-term CYS 10 D VdWContact
Pro 9 NTc.Cm1 N-term THR 7 D Hydrophobic
Pro 9 NTc.Cm1 N-term THR 7 D VdWContact
Cys 10 CX.1 CX THR 7 D VdWContact
Cys 10 CX.1 CX THR 8 D HBAcceptor
Cys 10 CX.1 CX THR 8 D HBDonor
Cys 10 CX.1 CX THR 8 D VdWContact
Phe 12 cxb1.1 N-loop LYS 33 D Hydrophobic
Phe 12 cxb1.1 N-loop THR 8 D Hydrophobic
Phe 12 cxb1.1 N-loop THR 8 D VdWContact
Ala 13 cxb1.2 N-loop LYS 33 E Hydrophobic
Arg 17 cxb1.8 N-loop GLU 54 E VdWContact
Leu 19 cxb1.11 N-loop TYR 29 E Hydrophobic
Ala 22 cxb1.16 N-loop MET 67 E Hydrophobic
His 23 B1.1 B1 MET 67 E Hydrophobic
His 23 B1.1 B1 MET 67 E VdWContact
His 23 B1.1 B1 ASN 63 E Hydrophobic
His 23 B1.1 B1 ILE 62 E Hydrophobic
His 23 B1.1 B1 GLU 66 E Hydrophobic
His 23 B1.1 B1 GLU 66 E VdWContact
Tyr 27 B1.5 B1 ARG 47 A Hydrophobic
Tyr 27 B1.5 B1 ARG 47 A VdWContact
Tyr 29 B1.7 B1 LEU 19 A Hydrophobic
Tyr 29 B1.7 B1 LEU 19 A VdWContact
Tyr 29 B1.7 B1 VAL 49 A Hydrophobic
Lys 33 b1b2.10 30s-loop PHE 12 D Hydrophobic
Lys 33 b1b2.10 30s-loop ALA 13 A Hydrophobic
Val 40 B2.3 B2 THR 7 D Hydrophobic
Thr 43 B2.6 B2 GLU 66 E VdWContact
Lys 45 b2b3.4 40s-loop GLU 66 E HBDonor
Lys 45 b2b3.4 40s-loop GLU 66 E Cationic
Lys 45 b2b3.4 40s-loop GLU 66 E VdWContact
Arg 47 b2b3.12 40s-loop GLU 26 E HBDonor
Arg 47 b2b3.12 40s-loop GLU 26 E Cationic
Arg 47 b2b3.12 40s-loop GLU 26 E VdWContact
Gln 48 B3.1 B3 SER 5 D VdWContact
Val 49 B3.2 B3 SER 5 D VdWContact
Val 49 B3.2 B3 TYR 29 E Hydrophobic
Ile 62 H.7 Helix HIS 23 A Hydrophobic
Asn 63 H.8 Helix HIS 23 A Hydrophobic
Glu 66 CT.1 C-term LYS 45 A VdWContact

Interaction pattern search
(0.00 = no similarity, 1.00 = identical)