Interactions for 5D65 — Binding Partner: CCL3
Structure details
- PDB ID: 5D65 open_in_new
- Protein: CCL3_HUMAN
- Organism: Homo sapiens
- UniProt ID: P10147 open_in_new
- Method: X-ray
- Resolution: 3.1 Å
- Date: April 20, 2016
- Reference: 10.1073/PNAS.1523981113 open_in_new
- State: Oligomer
- Chemokine Chain: B
- Partner Chain: A,C,D,E
Chemokine diagram
Interactions for this Binding Partner
Download list as CSV
| Chemokine Residue | Generic Number | Segment | Partner Residue | Partner Chain | Interaction Type |
|---|---|---|---|---|---|
| Leu 3 | NTc.Cm8 | N-term | ALA 10 | D | Hydrophobic |
| Leu 3 | NTc.Cm8 | N-term | ILE 41 | D | Hydrophobic |
| Leu 3 | NTc.Cm8 | N-term | GLN 49 | D | VdWContact |
| Leu 3 | NTc.Cm8 | N-term | PHE 29 | D | Hydrophobic |
| Leu 3 | NTc.Cm8 | N-term | PHE 29 | D | VdWContact |
| Ala 5 | NTc.Cm6 | N-term | GLU 30 | D | VdWContact |
| Ala 5 | NTc.Cm6 | N-term | SER 32 | D | VdWContact |
| Asp 6 | NTc.Cm5 | N-term | SER 33 | D | HBAcceptor |
| Asp 6 | NTc.Cm5 | N-term | SER 33 | D | VdWContact |
| Asp 6 | NTc.Cm5 | N-term | SER 14 | C | HBAcceptor |
| Asp 6 | NTc.Cm5 | N-term | SER 14 | C | VdWContact |
| Asp 6 | NTc.Cm5 | N-term | THR 16 | C | VdWContact |
| Asp 6 | NTc.Cm5 | N-term | SER 32 | D | HBAcceptor |
| Asp 6 | NTc.Cm5 | N-term | SER 32 | D | VdWContact |
| Asp 6 | NTc.Cm5 | N-term | CYS 51 | C | HBAcceptor |
| Asp 6 | NTc.Cm5 | N-term | CYS 51 | C | VdWContact |
| Pro 8 | NTc.Cm3 | N-term | ALA 10 | C | Hydrophobic |
| Pro 8 | NTc.Cm3 | N-term | GLN 49 | C | Hydrophobic |
| Pro 8 | NTc.Cm3 | N-term | ILE 41 | C | Hydrophobic |
| Pro 8 | NTc.Cm3 | N-term | ILE 41 | C | VdWContact |
| Pro 8 | NTc.Cm3 | N-term | CYS 51 | C | VdWContact |
| Thr 9 | NTc.Cm2 | N-term | CYS 11 | C | HBAcceptor |
| Thr 9 | NTc.Cm2 | N-term | CYS 11 | C | HBDonor |
| Thr 9 | NTc.Cm2 | N-term | CYS 11 | C | VdWContact |
| Thr 9 | NTc.Cm2 | N-term | PHE 13 | C | Hydrophobic |
| Thr 9 | NTc.Cm2 | N-term | PHE 13 | C | VdWContact |
| Thr 9 | NTc.Cm2 | N-term | BGC 101 | D | HBDonor |
| Thr 9 | NTc.Cm2 | N-term | BGC 101 | D | VdWContact |
| Ala 10 | NTc.Cm1 | N-term | LEU 3 | A | Hydrophobic |
| Ala 10 | NTc.Cm1 | N-term | PRO 8 | C | Hydrophobic |
| Ala 10 | NTc.Cm1 | N-term | LEU 3 | D | Hydrophobic |
| Ala 10 | NTc.Cm1 | N-term | LEU 3 | D | VdWContact |
| Cys 11 | CX.1 | CX | THR 9 | C | HBAcceptor |
| Cys 11 | CX.1 | CX | THR 9 | C | HBDonor |
| Cys 11 | CX.1 | CX | THR 9 | C | VdWContact |
| Phe 13 | cxb1.1 | N-loop | GLN 34 | C | Hydrophobic |
| Phe 13 | cxb1.1 | N-loop | GLN 34 | C | VdWContact |
| Phe 13 | cxb1.1 | N-loop | THR 9 | C | Hydrophobic |
| Phe 13 | cxb1.1 | N-loop | THR 9 | C | VdWContact |
| Tyr 15 | cxb1.5 | N-loop | SER 33 | A | HBAcceptor |
| Tyr 15 | cxb1.5 | N-loop | SER 33 | A | VdWContact |
| Thr 16 | cxb1.6 | N-loop | ASP 6 | C | VdWContact |
| Asn 23 | cxb1.16 | N-loop | LEU 68 | A | Hydrophobic |
| Phe 24 | B1.1 | B1 | GLU 67 | A | Hydrophobic |
| Phe 24 | B1.1 | B1 | GLU 67 | A | VdWContact |
| Phe 24 | B1.1 | B1 | LEU 68 | A | Hydrophobic |
| Phe 24 | B1.1 | B1 | VAL 63 | A | Hydrophobic |
| Phe 24 | B1.1 | B1 | SER 64 | A | VdWContact |
| Asp 27 | B1.4 | B1 | ARG 48 | E | HBAcceptor |
| Asp 27 | B1.4 | B1 | ARG 48 | E | Anionic |
| Asp 27 | B1.4 | B1 | ARG 48 | E | VdWContact |
| Asp 27 | B1.4 | B1 | ARG 46 | E | HBAcceptor |
| Asp 27 | B1.4 | B1 | ARG 46 | E | Anionic |
| Asp 27 | B1.4 | B1 | ARG 46 | E | VdWContact |
| Tyr 28 | B1.5 | B1 | ARG 48 | E | PiCation |
| Tyr 28 | B1.5 | B1 | ARG 48 | E | VdWContact |
| Tyr 28 | B1.5 | B1 | ARG 46 | E | Hydrophobic |
| Phe 29 | B1.6 | B1 | LEU 3 | D | Hydrophobic |
| Phe 29 | B1.6 | B1 | ARG 48 | E | PiCation |
| Phe 29 | B1.6 | B1 | ARG 48 | E | VdWContact |
| Glu 30 | B1.7 | B1 | ALA 5 | D | VdWContact |
| Ser 32 | b1b2.6 | 30s-loop | ALA 5 | D | VdWContact |
| Ser 32 | b1b2.6 | 30s-loop | BGC 101 | D | HBAcceptor |
| Ser 32 | b1b2.6 | 30s-loop | BGC 101 | D | VdWContact |
| Ser 32 | b1b2.6 | 30s-loop | ASP 6 | D | HBDonor |
| Ser 32 | b1b2.6 | 30s-loop | ASP 6 | D | VdWContact |
| Ser 33 | b1b2.9 | 30s-loop | SER 17 | E | VdWContact |
| Ser 33 | b1b2.9 | 30s-loop | TYR 15 | E | HBDonor |
| Ser 33 | b1b2.9 | 30s-loop | TYR 15 | E | VdWContact |
| Ser 33 | b1b2.9 | 30s-loop | ASP 6 | D | HBDonor |
| Ser 33 | b1b2.9 | 30s-loop | ASP 6 | D | VdWContact |
| Gln 34 | b1b2.10 | 30s-loop | PHE 13 | C | Hydrophobic |
| Gln 34 | b1b2.10 | 30s-loop | PHE 13 | C | VdWContact |
| Cys 35 | b1b2.12 | 30s-loop | GLC 101 | E | VdWContact |
| Pro 38 | b1b2.16 | 30s-loop | GLC 101 | E | VdWContact |
| Ile 41 | B2.3 | B2 | PRO 8 | C | Hydrophobic |
| Ile 41 | B2.3 | B2 | LEU 3 | D | Hydrophobic |
| Thr 44 | B2.6 | B2 | GLU 67 | A | HBDonor |
| Thr 44 | B2.6 | B2 | GLU 67 | A | VdWContact |
| Lys 45 | b2b3.2 | 40s-loop | GLU 67 | A | VdWContact |
| Arg 46 | b2b3.4 | 40s-loop | GLU 67 | A | Hydrophobic |
| Arg 46 | b2b3.4 | 40s-loop | GLU 67 | A | HBDonor |
| Arg 46 | b2b3.4 | 40s-loop | GLU 67 | A | VdWContact |
| Arg 46 | b2b3.4 | 40s-loop | TYR 28 | A | Hydrophobic |
| Arg 46 | b2b3.4 | 40s-loop | ASP 27 | A | HBDonor |
| Arg 46 | b2b3.4 | 40s-loop | ASP 27 | A | Cationic |
| Arg 46 | b2b3.4 | 40s-loop | ASP 27 | A | VdWContact |
| Arg 46 | b2b3.4 | 40s-loop | LEU 66 | A | HBDonor |
| Arg 46 | b2b3.4 | 40s-loop | LEU 66 | A | VdWContact |
| Arg 46 | b2b3.4 | 40s-loop | ALA 26 | A | VdWContact |
| Arg 46 | b2b3.4 | 40s-loop | BGC 101 | A | HBDonor |
| Arg 46 | b2b3.4 | 40s-loop | BGC 101 | A | VdWContact |
| Arg 48 | b2b3.12 | 40s-loop | ASP 27 | A | HBDonor |
| Arg 48 | b2b3.12 | 40s-loop | ASP 27 | A | Cationic |
| Arg 48 | b2b3.12 | 40s-loop | ASP 27 | A | VdWContact |
| Arg 48 | b2b3.12 | 40s-loop | TYR 28 | A | HBDonor |
| Arg 48 | b2b3.12 | 40s-loop | TYR 28 | A | VdWContact |
| Gln 49 | B3.1 | B3 | THR 7 | C | Hydrophobic |
| Gln 49 | B3.1 | B3 | LEU 3 | D | VdWContact |
| Cys 51 | B3.3 | B3 | PRO 8 | C | VdWContact |
| Cys 51 | B3.3 | B3 | ASP 6 | C | HBDonor |
| Cys 51 | B3.3 | B3 | ASP 6 | C | VdWContact |
| Val 63 | H.7 | Helix | PHE 24 | E | Hydrophobic |
| Ser 64 | H.8 | Helix | PHE 24 | E | VdWContact |
| Leu 66 | H.10 | Helix | ARG 46 | E | HBAcceptor |
| Leu 66 | H.10 | Helix | ARG 46 | E | VdWContact |
| Glu 67 | CT.1 | C-term | PHE 24 | E | Hydrophobic |
| Glu 67 | CT.1 | C-term | LYS 45 | E | VdWContact |
| Glu 67 | CT.1 | C-term | ARG 46 | E | HBAcceptor |
| Glu 67 | CT.1 | C-term | ARG 46 | E | VdWContact |
| Leu 68 | CT.2 | C-term | PHE 24 | E | Hydrophobic |
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