Interactions for 5L2U — Binding Partner: CCL5


Structure details

  • Chemokine Chain: G
  • Partner Chain: H
Download PDB

3D view

NGL viewer powered by MMTF.


Chemokine diagram

T S G K C S N P 30s-loop R K N R 40s-loop N P E K 50s-loopC-term S D T T P C C F A Y I A R P L P R A N-term Y F Y E K I H A V V F V T A C V Q K W V R E Y I N S L E M S

Interactions for this Binding Partner

Download list as CSV
Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Ser 5 NTc.Cm5 N-term CYS 50 H HBAcceptor
Ser 5 NTc.Cm5 N-term CYS 50 H VdWContact
Asp 6 NTc.Cm4 N-term GLN 48 H VdWContact
Asp 6 NTc.Cm4 N-term ARG 47 H Anionic
Thr 7 NTc.Cm3 N-term PRO 9 H Hydrophobic
Thr 7 NTc.Cm3 N-term VAL 40 H Hydrophobic
Thr 7 NTc.Cm3 N-term GLN 48 H Hydrophobic
Thr 7 NTc.Cm3 N-term GLN 48 H HBDonor
Thr 7 NTc.Cm3 N-term GLN 48 H VdWContact
Thr 7 NTc.Cm3 N-term CYS 10 H VdWContact
Thr 8 NTc.Cm2 N-term CYS 10 H HBAcceptor
Thr 8 NTc.Cm2 N-term CYS 10 H HBDonor
Thr 8 NTc.Cm2 N-term CYS 10 H VdWContact
Thr 8 NTc.Cm2 N-term PHE 12 H Hydrophobic
Thr 8 NTc.Cm2 N-term PHE 12 H VdWContact
Pro 9 NTc.Cm1 N-term THR 7 H Hydrophobic
Cys 10 CX.1 CX THR 8 H HBAcceptor
Cys 10 CX.1 CX THR 8 H HBDonor
Cys 10 CX.1 CX THR 8 H VdWContact
Phe 12 cxb1.1 N-loop LYS 33 H Hydrophobic
Phe 12 cxb1.1 N-loop LYS 33 H VdWContact
Phe 12 cxb1.1 N-loop THR 8 H Hydrophobic
Lys 33 b1b2.10 30s-loop PHE 12 H Hydrophobic
Val 40 B2.3 B2 THR 7 H Hydrophobic
Gln 48 B3.1 B3 SER 5 H VdWContact
Gln 48 B3.1 B3 ASP 6 H HBAcceptor
Gln 48 B3.1 B3 ASP 6 H VdWContact
Gln 48 B3.1 B3 THR 7 H Hydrophobic
Cys 50 B3.3 B3 ASP 6 H HBDonor
Cys 50 B3.3 B3 ASP 6 H VdWContact

Interaction pattern search
(0.00 = no similarity, 1.00 = identical)