Interactions

6WZM | CXCL8_HUMAN — LY3041658

Residue contacts: 45
SUMMARY
Protein
CXCL8_HUMAN View protein entry
Organism
Homo sapiens
UniProt ID
P10145 View on UniProt
PDB ID
6WZM View on PDB
Method
X-ray
Resolution
2.28 Å
Date
Nov. 25, 2020
Reference
10.1080/19420862.2020.1831880 Open DOI
State
Dimer
Chain information
Chemokine chain
E
Partner chain
A,B
3D VIEW
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INTERACTION TABLE
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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Leu 5 NTc.Cm2 N-term TRP 94 B HBAcceptor
Leu 5 NTc.Cm2 N-term TRP 94 B VdWContact
Leu 5 NTc.Cm2 N-term GLU 93 B Hydrophobic
Leu 5 NTc.Cm2 N-term GLU 93 B VdWContact
Arg 6 NTc.Cm1 N-term TRP 94 B Hydrophobic
Arg 6 NTc.Cm1 N-term GLU 99 A HBDonor
Arg 6 NTc.Cm1 N-term GLU 99 A Cationic
Arg 6 NTc.Cm1 N-term GLU 99 A VdWContact
Arg 6 NTc.Cm1 N-term TYR 110 A Hydrophobic
Arg 6 NTc.Cm1 N-term TYR 110 A CationPi
Arg 6 NTc.Cm1 N-term TYR 110 A VdWContact
Arg 6 NTc.Cm1 N-term ASN 91 B HBDonor
Arg 6 NTc.Cm1 N-term ASN 91 B VdWContact
Cys 7 CX.1 CX TRP 94 B Hydrophobic
Cys 7 CX.1 CX TRP 94 B VdWContact
Cys 7 CX.1 CX TRP 33 A Hydrophobic
Gln 8 CX.4 CX PRO 106 A Hydrophobic
Ile 10 cxb1.1 N-loop SER 52 A VdWContact
Ile 10 cxb1.1 N-loop TRP 33 A Hydrophobic
Ile 10 cxb1.1 N-loop TYR 32 A VdWContact
Ile 10 cxb1.1 N-loop TYR 102 A Hydrophobic
Ile 10 cxb1.1 N-loop TYR 102 A VdWContact
Lys 11 cxb1.2 N-loop SER 103 A VdWContact
Lys 11 cxb1.2 N-loop GLU 28 A Cationic
Lys 11 cxb1.2 N-loop THR 30 A HBDonor
Lys 11 cxb1.2 N-loop THR 30 A VdWContact
Lys 11 cxb1.2 N-loop TYR 104 A Hydrophobic
Tyr 13 cxb1.6 N-loop TYR 104 A Hydrophobic
His 33 b1b2.10 30s-loop TRP 94 B HBDonor
His 33 b1b2.10 30s-loop TRP 94 B VdWContact
Ala 35 b1b2.13 30s-loop ASN 59 A HBDonor
Ala 35 b1b2.13 30s-loop ASN 59 A VdWContact
Asn 36 b1b2.14 30s-loop SER 57 A VdWContact
Ile 40 B2.3 B2 PRO 106 A Hydrophobic
Ile 40 B2.3 B2 PRO 106 A VdWContact
Arg 47 b2b3.12 40s-loop TYR 105 A Hydrophobic
Arg 47 b2b3.12 40s-loop TYR 105 A VdWContact
Glu 48 B3.1 B3 PRO 106 A Hydrophobic
Glu 48 B3.1 B3 PRO 106 A VdWContact
Glu 48 B3.1 B3 TYR 105 A VdWContact
Leu 49 B3.2 B3 TYR 104 A Hydrophobic
Leu 49 B3.2 B3 TYR 105 A Hydrophobic
Cys 50 B3.3 B3 TYR 104 A Hydrophobic
Cys 50 B3.3 B3 TYR 104 A HBDonor
Cys 50 B3.3 B3 TYR 104 A VdWContact
CHEMOKINE DIAGRAM
I E S G P H C A N T 30s-loop S D G R 40s-loop D P K E 50s-loopC-term K E L R C Q C I K T Y S K P F H P K N-term V R L E K I F E I I V K L L C L E N W V Q R V V E K F L
INTERACTION PATTERN SEARCH
0.00 = no similarity, 1.00 = identical