Interactions for 6LFM — Binding Partner: CXCL8


Structure details

  • Chemokine Chain: D
  • Partner Chain: E
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Chemokine diagram

I E S G P H C A N T 30s-loop S D G R 40s-loop D P K E 50s-loopC-term A K E L R C Q C I K T Y S K P F H P K N-term V R L E K I F E I I V K L L C L E N W V Q R V V E K F L K R A E N S

Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Lys 23 B1.3 B1 GLU 29 E VdWContact
Lys 23 B1.3 B1 GLY 31 E VdWContact
Lys 23 B1.3 B1 SER 30 E HBDonor
Lys 23 B1.3 B1 SER 30 E VdWContact
Glu 24 B1.4 B1 VAL 27 E VdWContact
Glu 24 B1.4 B1 ARG 26 E Anionic
Leu 25 B1.5 B1 VAL 27 E Hydrophobic
Leu 25 B1.5 B1 VAL 27 E HBAcceptor
Leu 25 B1.5 B1 VAL 27 E HBDonor
Leu 25 B1.5 B1 VAL 27 E VdWContact
Leu 25 B1.5 B1 ARG 26 E VdWContact
Arg 26 B1.6 B1 ARG 26 E Hydrophobic
Arg 26 B1.6 B1 ARG 26 E VdWContact
Arg 26 B1.6 B1 LEU 25 E VdWContact
Val 27 B1.7 B1 PHE 65 E Hydrophobic
Val 27 B1.7 B1 GLU 24 E VdWContact
Val 27 B1.7 B1 LEU 25 E Hydrophobic
Val 27 B1.7 B1 LEU 25 E HBAcceptor
Val 27 B1.7 B1 LEU 25 E HBDonor
Val 27 B1.7 B1 LEU 25 E VdWContact
Ile 28 b1b2.4 30s-loop GLU 24 E Hydrophobic
Glu 29 b1b2.6 30s-loop PHE 65 E Hydrophobic
Glu 29 b1b2.6 30s-loop LYS 23 E HBAcceptor
Glu 29 b1b2.6 30s-loop LYS 23 E HBDonor
Glu 29 b1b2.6 30s-loop LYS 23 E Anionic
Glu 29 b1b2.6 30s-loop LYS 23 E VdWContact
Thr 37 b1b2.16 30s-loop ALA 69 E Hydrophobic
Phe 65 H.10 Helix GLU 29 E Hydrophobic
Phe 65 H.10 Helix VAL 27 E Hydrophobic
Leu 66 CT.1 C-term VAL 27 E Hydrophobic
Leu 66 CT.1 C-term VAL 27 E VdWContact
Leu 66 CT.1 C-term LEU 66 E Hydrophobic
Ala 69 CT.4 C-term GLU 29 E Hydrophobic
Ala 69 CT.4 C-term GLU 29 E VdWContact
Glu 70 CT.5 C-term GLN 59 E VdWContact
Ser 72 CT.7 C-term THR 37 E HBAcceptor
Ser 72 CT.7 C-term THR 37 E VdWContact

Interaction pattern search
(0.00 = no similarity, 1.00 = identical)