Interactions for 6LFM — Binding Partner: CXCL8


Structure details

  • Chemokine Chain: E
  • Partner Chain: D
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Chemokine diagram

I E S G P H C A N T 30s-loop S D G R 40s-loop D P K E 50s-loopC-term R C Q C I K T Y S K P F H P K N-term V R L E K I F E I I V K L L C L E N W V Q R V V E K F L K R A E N S

Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Lys 23 B1.3 B1 GLU 29 D HBAcceptor
Lys 23 B1.3 B1 GLU 29 D HBDonor
Lys 23 B1.3 B1 GLU 29 D Cationic
Lys 23 B1.3 B1 GLU 29 D VdWContact
Glu 24 B1.4 B1 VAL 27 D VdWContact
Glu 24 B1.4 B1 ILE 28 D Hydrophobic
Leu 25 B1.5 B1 VAL 27 D Hydrophobic
Leu 25 B1.5 B1 VAL 27 D HBAcceptor
Leu 25 B1.5 B1 VAL 27 D HBDonor
Leu 25 B1.5 B1 VAL 27 D VdWContact
Leu 25 B1.5 B1 ARG 26 D VdWContact
Arg 26 B1.6 B1 LEU 25 D VdWContact
Arg 26 B1.6 B1 ARG 26 D Hydrophobic
Arg 26 B1.6 B1 ARG 26 D VdWContact
Arg 26 B1.6 B1 GLU 24 D Cationic
Val 27 B1.7 B1 PHE 65 D Hydrophobic
Val 27 B1.7 B1 LEU 66 D Hydrophobic
Val 27 B1.7 B1 LEU 66 D VdWContact
Val 27 B1.7 B1 GLU 24 D VdWContact
Val 27 B1.7 B1 LEU 25 D Hydrophobic
Val 27 B1.7 B1 LEU 25 D HBAcceptor
Val 27 B1.7 B1 LEU 25 D HBDonor
Val 27 B1.7 B1 LEU 25 D VdWContact
Glu 29 b1b2.6 30s-loop LYS 23 D VdWContact
Glu 29 b1b2.6 30s-loop PHE 65 D Hydrophobic
Glu 29 b1b2.6 30s-loop ALA 69 D Hydrophobic
Glu 29 b1b2.6 30s-loop ALA 69 D VdWContact
Ser 30 b1b2.7 30s-loop LYS 23 D HBAcceptor
Ser 30 b1b2.7 30s-loop LYS 23 D VdWContact
Gly 31 b1b2.8 30s-loop LYS 23 D VdWContact
Thr 37 b1b2.16 30s-loop SER 72 D HBDonor
Thr 37 b1b2.16 30s-loop SER 72 D VdWContact
Gln 59 H.4 Helix GLU 70 D VdWContact
Phe 65 H.10 Helix GLU 29 D Hydrophobic
Phe 65 H.10 Helix VAL 27 D Hydrophobic
Leu 66 CT.1 C-term LEU 66 D Hydrophobic
Ala 69 CT.4 C-term THR 37 D Hydrophobic

Interaction pattern search
(0.00 = no similarity, 1.00 = identical)