Interactions for 5CMD — Binding Partner: CCL5


Structure details

  • Chemokine Chain: C
  • Partner Chain: A,B,D,E,F
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Chemokine diagram

S G K C S N P A 30s-loop R K N R 40s-loop N P E K 50s-loopC-term S D T T P C C F A Y I A R P L P R A H N-term T Y F Y E K I V V F V T A C V Q K W V R E Y I N S L E M S
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Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Ser 5 58 N-term GLN 48 D HBAcceptor
Ser 5 58 N-term GLN 48 D VdWContact
Asp 6 59 N-term CYS 50 D Hydrophobic
Asp 6 59 N-term CYS 50 D HBAcceptor
Asp 6 59 N-term CYS 50 D VdWContact
Asp 6 59 N-term GLN 48 D HBDonor
Asp 6 59 N-term GLN 48 D VdWContact
Thr 7 60 N-term CYS 10 D VdWContact
Thr 7 60 N-term PRO 9 D Hydrophobic
Thr 7 60 N-term VAL 40 D Hydrophobic
Thr 8 61 N-term PHE 12 D VdWContact
Thr 8 61 N-term CYS 10 D HBAcceptor
Thr 8 61 N-term CYS 10 D HBDonor
Thr 8 61 N-term CYS 10 D VdWContact
Pro 9 62 N-term THR 7 D Hydrophobic
Pro 9 62 N-term THR 7 D VdWContact
Cys 10 63 CX THR 7 D VdWContact
Cys 10 63 CX THR 8 D HBAcceptor
Cys 10 63 CX THR 8 D HBDonor
Cys 10 63 CX THR 8 D VdWContact
Phe 12 68 N-loop LYS 33 D Hydrophobic
Phe 12 68 N-loop THR 8 D Hydrophobic
Phe 12 68 N-loop THR 8 D VdWContact
Ala 13 69 N-loop LYS 33 E Hydrophobic
Arg 17 73 N-loop GLU 54 E VdWContact
Leu 19 75 N-loop TYR 29 E Hydrophobic
Ala 22 81 N-loop MET 67 E Hydrophobic
His 23 82 N-loop MET 67 E Hydrophobic
His 23 82 N-loop MET 67 E VdWContact
His 23 82 N-loop ASN 63 E Hydrophobic
His 23 82 N-loop ILE 62 E Hydrophobic
His 23 82 N-loop GLU 66 E Hydrophobic
His 23 82 N-loop GLU 66 E VdWContact
Tyr 27 86 B1 ARG 47 A Hydrophobic
Tyr 27 86 B1 ARG 47 A VdWContact
Tyr 29 88 B1 LEU 19 A Hydrophobic
Tyr 29 88 B1 LEU 19 A VdWContact
Tyr 29 88 B1 VAL 49 A Hydrophobic
Lys 33 94 30s-loop PHE 12 D Hydrophobic
Lys 33 94 30s-loop ALA 13 A Hydrophobic
Val 40 102 B2 THR 7 D Hydrophobic
Thr 43 105 B2 GLU 66 E VdWContact
Lys 45 112 40s-loop GLU 66 E HBDonor
Lys 45 112 40s-loop GLU 66 E Cationic
Lys 45 112 40s-loop GLU 66 E VdWContact
Arg 47 114 40s-loop GLU 26 E HBDonor
Arg 47 114 40s-loop GLU 26 E Cationic
Arg 47 114 40s-loop GLU 26 E VdWContact
Gln 48 115 B3 SER 5 D VdWContact
Val 49 116 B3 SER 5 D VdWContact
Val 49 116 B3 TYR 29 E Hydrophobic
Ile 62 129 Helix HIS 23 A Hydrophobic
Asn 63 130 Helix HIS 23 A Hydrophobic
Glu 66 133 Helix LYS 45 A VdWContact

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