Interactions for 5CMD — Binding Partner: CCL5


Structure details

  • Chemokine Chain: D
  • Partner Chain: A,B,C,E,F
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Chemokine diagram

S G K C S N P A 30s-loop R K N R 40s-loop N P E K 50s-loopC-term S D T T P C C F A Y I A R P L P R A H N-term T Y F Y E K I V V F V T A C V Q K W V R E Y I N S L E M S
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Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Ser 5 58 N-term VAL 49 C VdWContact
Ser 5 58 N-term SER 31 E VdWContact
Ser 5 58 N-term GLY 32 E VdWContact
Ser 5 58 N-term GLN 48 C VdWContact
Thr 7 60 N-term CYS 10 C VdWContact
Thr 7 60 N-term VAL 40 C Hydrophobic
Thr 7 60 N-term PRO 9 C Hydrophobic
Thr 7 60 N-term PRO 9 C VdWContact
Thr 8 61 N-term CYS 10 C HBAcceptor
Thr 8 61 N-term CYS 10 C HBDonor
Thr 8 61 N-term CYS 10 C VdWContact
Thr 8 61 N-term PHE 12 C Hydrophobic
Thr 8 61 N-term PHE 12 C VdWContact
Pro 9 62 N-term THR 7 C Hydrophobic
Cys 10 63 CX THR 8 C HBAcceptor
Cys 10 63 CX THR 8 C HBDonor
Cys 10 63 CX THR 8 C VdWContact
Cys 10 63 CX THR 7 C VdWContact
Phe 12 68 N-loop LYS 33 B HBAcceptor
Phe 12 68 N-loop LYS 33 B VdWContact
Phe 12 68 N-loop THR 8 C VdWContact
Phe 12 68 N-loop LYS 33 C Hydrophobic
Ala 13 69 N-loop LYS 33 B Hydrophobic
Leu 19 75 N-loop TYR 29 B Hydrophobic
Leu 19 75 N-loop TYR 29 B VdWContact
Ala 22 81 N-loop MET 67 B Hydrophobic
His 23 82 N-loop MET 67 B Hydrophobic
His 23 82 N-loop ASN 63 B Hydrophobic
His 23 82 N-loop ASN 63 B HBDonor
His 23 82 N-loop ASN 63 B VdWContact
His 23 82 N-loop ILE 62 B Hydrophobic
His 23 82 N-loop GLU 66 B Hydrophobic
His 23 82 N-loop GLU 66 B VdWContact
Glu 26 85 B1 ARG 47 F Anionic
Glu 26 85 B1 ARG 47 F VdWContact
Tyr 27 86 B1 ARG 47 F Hydrophobic
Tyr 27 86 B1 ARG 47 F HBAcceptor
Tyr 27 86 B1 ARG 47 F VdWContact
Tyr 29 88 B1 VAL 49 F Hydrophobic
Lys 33 94 30s-loop ALA 13 F Hydrophobic
Lys 33 94 30s-loop PHE 12 C Hydrophobic
Val 40 102 B2 THR 7 C Hydrophobic
Thr 43 105 B2 GLU 66 B VdWContact
Lys 45 112 40s-loop GLU 66 B Hydrophobic
Arg 47 114 40s-loop GLU 26 B Cationic
Gln 48 115 B3 ASP 6 C HBAcceptor
Gln 48 115 B3 ASP 6 C VdWContact
Gln 48 115 B3 SER 5 C HBDonor
Gln 48 115 B3 SER 5 C VdWContact
Cys 50 117 B3 ASP 6 C Hydrophobic
Cys 50 117 B3 ASP 6 C HBDonor
Cys 50 117 B3 ASP 6 C VdWContact
Ile 62 129 Helix HIS 23 F Hydrophobic
Asn 63 130 Helix HIS 23 F Hydrophobic
Asn 63 130 Helix HIS 23 F VdWContact
Leu 65 132 Helix LYS 45 F Hydrophobic
Leu 65 132 Helix LYS 45 F VdWContact
Glu 66 133 Helix HIS 23 F Hydrophobic
Glu 66 133 Helix HIS 23 F VdWContact
Glu 66 133 Helix LYS 45 F HBAcceptor
Glu 66 133 Helix LYS 45 F VdWContact
Glu 66 133 Helix THR 43 F HBAcceptor
Glu 66 133 Helix THR 43 F VdWContact
Met 67 134 Helix HIS 23 F Hydrophobic

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