Interactions for 5EKI — Binding Partner: CCL21


Structure details

  • Chemokine Chain: B
  • Partner Chain: C,E
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Chemokine diagram

E P S L G C S I P A 30s-loop R K R S Q A 40s-loop D P K E 50s-loopC-term Q D C C L K Y S Q R K I P A K V N-term Q K R Y S R V I L F L P A C L E L W V Q Q L M Q H L D K T P S P Q K P
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Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Asp 7 62 N-term GLN 74 E VdWContact
Asp 7 62 N-term PRO 73 E Hydrophobic
Asp 7 62 N-term ARG 26 E HBAcceptor
Asp 7 62 N-term ARG 26 E Anionic
Asp 7 62 N-term ARG 26 E VdWContact
Cys 8 63 CX GLN 74 E HBAcceptor
Cys 8 63 CX GLN 74 E HBDonor
Cys 8 63 CX GLN 74 E VdWContact
Leu 10 68 N-loop GLN 74 E Hydrophobic
Leu 10 68 N-loop GLN 74 E VdWContact
Leu 10 68 N-loop ALA 77 E Hydrophobic
Lys 11 69 N-loop PRO 71 E Hydrophobic
Lys 11 69 N-loop ASP 68 E Hydrophobic
Lys 11 69 N-loop ASP 68 E Cationic
Ser 13 71 N-loop PRO 71 E VdWContact
Gln 14 72 N-loop LYS 69 E HBDonor
Gln 14 72 N-loop LYS 69 E VdWContact
Arg 15 73 N-loop THR 70 E Hydrophobic
Arg 15 73 N-loop THR 70 E VdWContact
Arg 23 84 B1 GLN 48 C HBDonor
Arg 23 84 B1 GLN 48 C VdWContact
Arg 23 84 B1 ALA 49 C Hydrophobic
Arg 23 84 B1 ARG 46 C HBDonor
Arg 23 84 B1 ARG 46 C VdWContact
Gly 33 94 30s-loop ALA 77 E VdWContact
Leu 40 102 B2 PRO 73 E Hydrophobic
Arg 44 106 40s-loop SER 47 C VdWContact
Arg 46 108 40s-loop ARG 46 E HBAcceptor
Arg 46 108 40s-loop ARG 46 E VdWContact
Ser 47 109 40s-loop ARG 44 E HBAcceptor
Ser 47 109 40s-loop ARG 44 E VdWContact
Gln 48 113 40s-loop ARG 46 E HBAcceptor
Gln 48 113 40s-loop ARG 46 E VdWContact
Ala 49 114 40s-loop ARG 23 E Hydrophobic
Glu 50 115 B3 PRO 73 E Hydrophobic
Glu 50 115 B3 SER 72 E VdWContact
Leu 51 116 B3 PRO 71 E VdWContact
Leu 51 116 B3 THR 70 E Hydrophobic
Leu 51 116 B3 THR 70 E VdWContact
Cys 52 117 B3 PRO 71 E Hydrophobic
Cys 52 117 B3 PRO 71 E HBDonor
Cys 52 117 B3 PRO 71 E VdWContact
Asp 68 133 Helix LYS 11 C Hydrophobic
Asp 68 133 Helix LYS 11 C Anionic
Lys 69 134 Helix GLN 14 C Hydrophobic
Lys 69 134 Helix GLN 14 C HBAcceptor
Lys 69 134 Helix GLN 14 C VdWContact
Thr 70 135 Helix LEU 51 C Hydrophobic
Thr 70 135 Helix ARG 15 C Hydrophobic
Pro 71 136 C-term CYS 52 C Hydrophobic
Pro 71 136 C-term CYS 52 C HBAcceptor
Pro 71 136 C-term CYS 52 C VdWContact
Pro 71 136 C-term LYS 11 C Hydrophobic
Pro 71 136 C-term SER 13 C VdWContact
Pro 73 138 C-term ASP 7 C Hydrophobic
Pro 73 138 C-term GLU 50 C Hydrophobic
Pro 73 138 C-term LEU 40 C Hydrophobic
Gln 74 139 C-term ASP 7 C VdWContact
Gln 74 139 C-term CYS 8 C HBAcceptor
Gln 74 139 C-term CYS 8 C HBDonor
Gln 74 139 C-term CYS 8 C VdWContact
Gln 74 139 C-term LEU 10 C Hydrophobic

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