Interactions for 1M8A — Binding Partner: CCL20


Structure details

  • Chemokine Chain: A
  • Partner Chain: B
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Chemokine diagram

Q L A N E G C D I N 30s-loop K K K L 40s-loop N P K Q 50s-loopC-term D C C L G Y T D R I L H P K N-term R T F G V I F A I I F H T A C V S T W V K Y I V R L L S K

Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Asp 5 NTc.Cm1 N-term LYS 44 B Anionic
Val 21 B1.3 B1 THR 24 B Hydrophobic
Val 21 B1.3 B1 ARG 25 B HBAcceptor
Val 21 B1.3 B1 ARG 25 B VdWContact
Gly 22 B1.4 B1 PHE 23 B VdWContact
Gly 22 B1.4 B1 THR 24 B VdWContact
Phe 23 B1.5 B1 GLY 22 B VdWContact
Phe 23 B1.5 B1 PHE 23 B Hydrophobic
Phe 23 B1.5 B1 PHE 23 B HBAcceptor
Phe 23 B1.5 B1 PHE 23 B HBDonor
Phe 23 B1.5 B1 PHE 23 B VdWContact
Phe 23 B1.5 B1 LEU 63 B Hydrophobic
Thr 24 B1.6 B1 HIS 40 B Hydrophobic
Thr 24 B1.6 B1 GLY 22 B VdWContact
Thr 24 B1.6 B1 VAL 21 B Hydrophobic
Thr 24 B1.6 B1 VAL 21 B VdWContact
Arg 25 B1.7 B1 VAL 21 B HBDonor
Arg 25 B1.7 B1 VAL 21 B VdWContact
Arg 25 B1.7 B1 LYS 65 B VdWContact
Arg 25 B1.7 B1 LEU 63 B VdWContact
Glu 30 b1b2.9 30s-loop LYS 42 B HBAcceptor
Glu 30 b1b2.9 30s-loop LYS 42 B Anionic
Glu 30 b1b2.9 30s-loop LYS 42 B VdWContact
His 40 B2.5 B2 HIS 40 B Hydrophobic
His 40 B2.5 B2 THR 24 B HBDonor
His 40 B2.5 B2 THR 24 B VdWContact
Leu 63 H.10 Helix ARG 25 B HBAcceptor
Leu 63 H.10 Helix ARG 25 B VdWContact
Leu 63 H.10 Helix PHE 23 B Hydrophobic
Ser 64 CT.1 C-term SER 64 B HBAcceptor
Ser 64 CT.1 C-term SER 64 B VdWContact
Lys 65 CT.2 C-term ARG 25 B VdWContact

Interaction pattern search
(0.00 = no similarity, 1.00 = identical)