Interactions for 1M8A — Binding Partner: CCL20


Structure details

  • Chemokine Chain: B
  • Partner Chain: A
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Chemokine diagram

Q L A N E G C D I N 30s-loop K K K L 40s-loop N P K Q 50s-loopC-term D C C L G Y T D R I L H P K N-term R T F G V I F A I I F H T A C V S T W V K Y I V R L L S K

Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Val 21 B1.3 B1 ARG 25 A HBAcceptor
Val 21 B1.3 B1 ARG 25 A VdWContact
Val 21 B1.3 B1 THR 24 A Hydrophobic
Val 21 B1.3 B1 THR 24 A VdWContact
Gly 22 B1.4 B1 THR 24 A VdWContact
Gly 22 B1.4 B1 PHE 23 A VdWContact
Phe 23 B1.5 B1 GLY 22 A VdWContact
Phe 23 B1.5 B1 LEU 63 A Hydrophobic
Phe 23 B1.5 B1 PHE 23 A Hydrophobic
Phe 23 B1.5 B1 PHE 23 A HBAcceptor
Phe 23 B1.5 B1 PHE 23 A HBDonor
Phe 23 B1.5 B1 PHE 23 A VdWContact
Thr 24 B1.6 B1 GLY 22 A VdWContact
Thr 24 B1.6 B1 HIS 40 A HBAcceptor
Thr 24 B1.6 B1 HIS 40 A VdWContact
Thr 24 B1.6 B1 VAL 21 A Hydrophobic
Arg 25 B1.7 B1 LEU 63 A HBDonor
Arg 25 B1.7 B1 LEU 63 A VdWContact
Arg 25 B1.7 B1 LYS 65 A VdWContact
Arg 25 B1.7 B1 VAL 21 A HBDonor
Arg 25 B1.7 B1 VAL 21 A VdWContact
His 40 B2.5 B2 HIS 40 A Hydrophobic
His 40 B2.5 B2 THR 24 A Hydrophobic
His 40 B2.5 B2 IPA 102 A Hydrophobic
Lys 42 b2b3.2 40s-loop GLU 30 A HBDonor
Lys 42 b2b3.2 40s-loop GLU 30 A Cationic
Lys 42 b2b3.2 40s-loop GLU 30 A VdWContact
Lys 44 b2b3.11 40s-loop ASP 5 A Cationic
Leu 63 H.10 Helix ARG 25 A VdWContact
Leu 63 H.10 Helix PHE 23 A Hydrophobic
Ser 64 CT.1 C-term SER 64 A HBDonor
Ser 64 CT.1 C-term SER 64 A VdWContact
Lys 65 CT.2 C-term ARG 25 A VdWContact
Lys 65 CT.2 C-term IPA 107 A HBAcceptor
Lys 65 CT.2 C-term IPA 107 A VdWContact

Interaction pattern search
(0.00 = no similarity, 1.00 = identical)