Interactions for 2J7Z — Binding Partner: CXCL12


Structure details

  • Chemokine Chain: A
  • Partner Chain: B
Download Full PDB

3D view

NGL viewer powered by MMTF.


Chemokine diagram

N T P N C A L Q 30s-loop K N N N R 40s-loop D P K L 50s-loopC-term K P V S L S Y R C P C R F F E S H V A R A N N-term L I K L H K V I V A R L I C V Q K W I Q E Y L E K A L N K
Pick color:
 
 
 
 
 
 
 
 
 
 
 
 


Interactions for this Binding Partner

Download list in excel
Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Val 23 83 B1 ASN 30 B HBAcceptor
Val 23 83 B1 ASN 30 B VdWContact
Lys 24 84 B1 ASN 30 B HBAcceptor
Lys 24 84 B1 ASN 30 B VdWContact
His 25 85 B1 LEU 29 B Hydrophobic
His 25 85 B1 LYS 27 B Hydrophobic
Leu 26 86 B1 ILE 28 B HBAcceptor
Leu 26 86 B1 ILE 28 B HBDonor
Leu 26 86 B1 ILE 28 B VdWContact
Leu 26 86 B1 LYS 27 B VdWContact
Lys 27 87 B1 LEU 26 B VdWContact
Lys 27 87 B1 HIS 25 B Hydrophobic
Lys 27 87 B1 LYS 27 B Hydrophobic
Ile 28 88 B1 HIS 25 B VdWContact
Ile 28 88 B1 LEU 26 B HBAcceptor
Ile 28 88 B1 LEU 26 B HBDonor
Ile 28 88 B1 LEU 26 B VdWContact
Ile 28 88 B1 LEU 62 B Hydrophobic
Ile 28 88 B1 ALA 65 B Hydrophobic
Ile 28 88 B1 TYR 61 B Hydrophobic
Ile 28 88 B1 TYR 61 B HBAcceptor
Ile 28 88 B1 TYR 61 B VdWContact
Ile 28 88 B1 ILE 28 B Hydrophobic
Leu 29 89 B1 HIS 25 B Hydrophobic
Asn 30 90 30s-loop LYS 24 B HBDonor
Asn 30 90 30s-loop LYS 24 B VdWContact
Asn 30 90 30s-loop VAL 23 B HBDonor
Asn 30 90 30s-loop VAL 23 B VdWContact
Asn 30 90 30s-loop TYR 61 B Hydrophobic
Asn 30 90 30s-loop TYR 61 B VdWContact
Gln 37 100 30s-loop ALA 65 B Hydrophobic
Gln 37 100 30s-loop ALA 65 B VdWContact
Ile 38 101 B2 LEU 66 B Hydrophobic
Ile 58 125 Helix LEU 66 B Hydrophobic
Gln 59 126 Helix LEU 66 B Hydrophobic
Gln 59 126 Helix LYS 68 B VdWContact
Tyr 61 128 Helix ASN 30 B Hydrophobic
Tyr 61 128 Helix ASN 30 B VdWContact
Tyr 61 128 Helix ILE 28 B Hydrophobic
Tyr 61 128 Helix ILE 28 B HBDonor
Tyr 61 128 Helix ILE 28 B VdWContact
Leu 62 129 Helix LEU 66 B Hydrophobic
Leu 62 129 Helix LEU 62 B Hydrophobic
Leu 62 129 Helix ILE 28 B Hydrophobic
Ala 65 132 Helix GLN 37 B Hydrophobic
Ala 65 132 Helix GLN 37 B VdWContact
Ala 65 132 Helix ILE 38 B Hydrophobic
Ala 65 132 Helix ILE 28 B Hydrophobic
Leu 66 133 Helix ILE 38 B Hydrophobic
Leu 66 133 Helix LEU 62 B Hydrophobic
Leu 66 133 Helix LEU 62 B VdWContact
Leu 66 133 Helix ILE 58 B Hydrophobic
Leu 66 133 Helix LYS 54 B HBAcceptor
Leu 66 133 Helix LYS 54 B VdWContact
Lys 68 135 Helix GLN 37 B VdWContact
Lys 68 135 Helix PRO 32 B HBDonor
Lys 68 135 Helix PRO 32 B VdWContact
Lys 68 135 Helix LYS 54 B HBAcceptor
Lys 68 135 Helix LYS 54 B Anionic
Lys 68 135 Helix LYS 54 B VdWContact

Interaction pattern search
Search complexes with similar interaction patterns:

Specify the minimum similarity (0.00 no similarity, 1.00 identical)