Interactions for 2JP1 — Binding Partner: XCL1


Structure details

  • Chemokine Chain: A
  • Partner Chain: B
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Chemokine diagram

E G S L R A 30s-loop K R G L 40s-loop D P Q A 50s-loopC-term V G S E V S D K R T C V S L T T Q R L P V S R N-term T I T Y T K I V I F I T A C V K T W V R D V V
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Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Val 5 57 N-term THR 15 B Hydrophobic
Ser 6 58 N-term THR 15 B HBAcceptor
Ser 6 58 N-term THR 15 B VdWContact
Asp 7 59 N-term GLN 17 B HBAcceptor
Asp 7 59 N-term GLN 17 B VdWContact
Lys 8 60 N-term THR 16 B VdWContact
Thr 10 62 N-term THR 15 B HBDonor
Thr 10 62 N-term THR 15 B VdWContact
Thr 10 62 N-term LEU 14 B Hydrophobic
Thr 10 62 N-term LEU 14 B VdWContact
Val 12 68 N-loop VAL 12 B Hydrophobic
Val 12 68 N-loop VAL 12 B VdWContact
Val 12 68 N-loop LEU 14 B Hydrophobic
Leu 14 70 N-loop ALA 49 B Hydrophobic
Leu 14 70 N-loop ALA 49 B VdWContact
Leu 14 70 N-loop VAL 47 B Hydrophobic
Leu 14 70 N-loop THR 10 B Hydrophobic
Leu 14 70 N-loop THR 10 B VdWContact
Leu 14 70 N-loop VAL 12 B Hydrophobic
Thr 16 72 N-loop ASP 7 B VdWContact
Thr 16 72 N-loop PRO 51 B Hydrophobic
Thr 16 72 N-loop PRO 51 B VdWContact
Thr 16 72 N-loop SER 6 B VdWContact
Gln 17 73 N-loop PRO 51 B Hydrophobic
Gln 17 73 N-loop PRO 51 B VdWContact
Gln 17 73 N-loop ASP 7 B Hydrophobic
Gln 17 73 N-loop ASP 7 B HBDonor
Gln 17 73 N-loop ASP 7 B VdWContact
Gln 17 73 N-loop GLN 52 B Hydrophobic
Gln 17 73 N-loop GLN 52 B HBAcceptor
Gln 17 73 N-loop GLN 52 B VdWContact
Arg 18 74 N-loop PRO 51 B VdWContact
Arg 18 74 N-loop LEU 34 B VdWContact
Arg 18 74 N-loop GLN 52 B HBAcceptor
Arg 18 74 N-loop GLN 52 B VdWContact
Leu 19 75 N-loop SER 33 B VdWContact
Lys 25 84 B1 GLU 31 B Hydrophobic
Lys 25 84 B1 GLU 31 B HBDonor
Lys 25 84 B1 GLU 31 B Cationic
Lys 25 84 B1 GLU 31 B VdWContact
Tyr 27 86 B1 ILE 29 B Hydrophobic
Tyr 27 86 B1 ILE 29 B VdWContact
Tyr 27 86 B1 GLU 31 B Hydrophobic
Tyr 27 86 B1 GLU 31 B HBDonor
Tyr 27 86 B1 GLU 31 B VdWContact
Ile 29 88 B1 ILE 38 B Hydrophobic
Ile 29 88 B1 ILE 38 B VdWContact
Ile 29 88 B1 TYR 27 B Hydrophobic
Ile 29 88 B1 TYR 27 B VdWContact
Ile 29 88 B1 ILE 29 B Hydrophobic
Ile 29 88 B1 ILE 29 B VdWContact
Glu 31 90 30s-loop TYR 27 B HBAcceptor
Glu 31 90 30s-loop TYR 27 B VdWContact
Glu 31 90 30s-loop ILE 40 B Hydrophobic
Glu 31 90 30s-loop ILE 40 B VdWContact
Glu 31 90 30s-loop LYS 25 B Hydrophobic
Glu 31 90 30s-loop LYS 25 B HBAcceptor
Glu 31 90 30s-loop LYS 25 B Anionic
Glu 31 90 30s-loop LYS 25 B VdWContact
Ser 33 96 30s-loop LEU 19 B VdWContact
Leu 34 97 30s-loop ILE 40 B Hydrophobic
Leu 34 97 30s-loop ILE 40 B VdWContact
Leu 34 97 30s-loop ARG 18 B VdWContact
Ala 36 100 30s-loop ILE 38 B Hydrophobic
Ala 36 100 30s-loop LEU 45 B Hydrophobic
Ile 38 102 B2 ILE 38 B Hydrophobic
Ile 38 102 B2 ILE 38 B VdWContact
Ile 38 102 B2 ILE 29 B Hydrophobic
Ile 38 102 B2 ILE 29 B VdWContact
Ile 38 102 B2 ALA 36 B Hydrophobic
Ile 40 104 B2 GLU 31 B Hydrophobic
Ile 40 104 B2 GLU 31 B VdWContact
Ile 40 104 B2 LEU 34 B Hydrophobic
Ile 40 104 B2 LEU 34 B VdWContact
Leu 45 114 40s-loop ALA 49 B Hydrophobic
Leu 45 114 40s-loop ALA 49 B VdWContact
Leu 45 114 40s-loop ALA 36 B Hydrophobic
Leu 45 114 40s-loop VAL 47 B Hydrophobic
Leu 45 114 40s-loop VAL 47 B VdWContact
Val 47 116 B3 VAL 47 B Hydrophobic
Val 47 116 B3 VAL 47 B VdWContact
Val 47 116 B3 LEU 45 B Hydrophobic
Val 47 116 B3 LEU 45 B VdWContact
Val 47 116 B3 LEU 14 B Hydrophobic
Ala 49 118 B3 THR 16 B Hydrophobic
Ala 49 118 B3 THR 16 B VdWContact
Ala 49 118 B3 LEU 14 B Hydrophobic
Ala 49 118 B3 LEU 14 B VdWContact
Ala 49 118 B3 LEU 45 B Hydrophobic
Ala 49 118 B3 LEU 45 B VdWContact
Pro 51 120 50s-loop ARG 18 B Hydrophobic
Pro 51 120 50s-loop THR 16 B Hydrophobic
Pro 51 120 50s-loop THR 16 B VdWContact
Gln 52 121 50s-loop ARG 18 B VdWContact
Gln 52 121 50s-loop LEU 19 B VdWContact

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