Interactions for 1PFN — Binding Partner: CXCL4


Structure details

  • Chemokine Chain: B
  • Partner Chain: A,C,D
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Chemokine diagram

I K A G P H C P T A 30s-loop K N G R 40s-loop D L Q A 50s-loopC-term M S A K E L R C Q C V K T T S Q V R P R N-term V E L S T I H Q L I A T L L C I K P L Y K K I I K K L L E S

Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Gln 9 NTc.Cm1 N-term THR 16 D VdWContact
Leu 11 CX.4 CX GLN 11 D Hydrophobic
Leu 11 CX.4 CX GLN 11 D HBDonor
Leu 11 CX.4 CX GLN 11 D VdWContact
Thr 25 B1.3 B1 GLY 48 C HBDonor
Thr 25 B1.3 B1 GLY 48 C VdWContact
Ser 26 B1.4 B1 VAL 29 A VdWContact
Ser 26 B1.4 B1 ILE 30 A VdWContact
Leu 27 B1.5 B1 VAL 29 A Hydrophobic
Leu 27 B1.5 B1 VAL 29 A HBAcceptor
Leu 27 B1.5 B1 VAL 29 A VdWContact
Val 29 B1.7 B1 LEU 67 A Hydrophobic
Val 29 B1.7 B1 SER 26 A VdWContact
Ile 30 b1b2.4 30s-loop SER 26 A VdWContact
Ile 30 b1b2.4 30s-loop THR 25 A VdWContact
Lys 31 b1b2.6 30s-loop LEU 67 A Hydrophobic
Lys 31 b1b2.6 30s-loop LEU 67 A VdWContact
Lys 31 b1b2.6 30s-loop SER 70 A VdWContact
Lys 46 b2b3.2 40s-loop GLY 48 C HBAcceptor
Lys 46 b2b3.2 40s-loop GLY 48 C VdWContact
Gly 48 b2b3.11 40s-loop GLY 48 C VdWContact
Gly 48 b2b3.11 40s-loop LYS 46 C HBDonor
Gly 48 b2b3.11 40s-loop LYS 46 C VdWContact
Arg 49 b2b3.12 40s-loop HIS 35 D Hydrophobic
Arg 49 b2b3.12 40s-loop HIS 35 D VdWContact
Lys 50 B3.1 B3 ARG 9 D VdWContact
Leu 55 b3h.2 50s-loop ILE 64 A Hydrophobic
Leu 55 b3h.2 50s-loop LEU 68 A Hydrophobic
Tyr 60 H.3 Helix LEU 68 A VdWContact
Ile 64 H.7 Helix ILE 64 A Hydrophobic
Leu 67 H.10 Helix VAL 29 A Hydrophobic
Leu 67 H.10 Helix VAL 29 A VdWContact
Leu 67 H.10 Helix LEU 55 A Hydrophobic
Leu 67 H.10 Helix LYS 31 A Hydrophobic
Leu 67 H.10 Helix LYS 31 A VdWContact
Leu 68 CT.1 C-term TYR 60 A VdWContact
Leu 68 CT.1 C-term LEU 55 A Hydrophobic
Leu 68 CT.1 C-term LEU 55 A VdWContact
Ser 70 CT.3 C-term LYS 31 A VdWContact

Interaction pattern search
(0.00 = no similarity, 1.00 = identical)