Interactions for 1PFN — Binding Partner: CXCL4


Structure details

  • Chemokine Chain: C
  • Partner Chain: A,B,D
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Chemokine diagram

I K A G P H C P T A 30s-loop K N G R 40s-loop D L Q A 50s-loopC-term M S A K E L R C Q C V K T T S Q V R P R N-term V E L S T I H Q L I A T L L C I K P L Y K K I I K K L L E S

Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Gln 9 NTc.Cm1 N-term CYS 12 A Cationic
Gln 9 NTc.Cm1 N-term GLN 11 A HBDonor
Gln 9 NTc.Cm1 N-term GLN 11 A VdWContact
Cys 10 CX.1 CX GLN 11 A HBAcceptor
Cys 10 CX.1 CX GLN 11 A VdWContact
Leu 11 CX.4 CX GLN 11 A Hydrophobic
Leu 11 CX.4 CX GLN 11 A VdWContact
Thr 25 B1.3 B1 LYS 31 D VdWContact
Ser 26 B1.4 B1 ILE 30 D VdWContact
Val 29 B1.7 B1 SER 26 D VdWContact
Val 29 B1.7 B1 LEU 67 D Hydrophobic
Val 29 B1.7 B1 LEU 27 D Hydrophobic
Val 29 B1.7 B1 LEU 27 D HBAcceptor
Val 29 B1.7 B1 LEU 27 D HBDonor
Val 29 B1.7 B1 LEU 27 D VdWContact
Ile 30 b1b2.4 30s-loop SER 26 D VdWContact
Ile 30 b1b2.4 30s-loop THR 25 D VdWContact
Lys 31 b1b2.6 30s-loop LEU 67 D Hydrophobic
Lys 31 b1b2.6 30s-loop LEU 67 D VdWContact
Lys 31 b1b2.6 30s-loop THR 25 D HBDonor
Lys 31 b1b2.6 30s-loop THR 25 D VdWContact
Lys 46 b2b3.2 40s-loop GLY 48 B HBAcceptor
Lys 46 b2b3.2 40s-loop GLY 48 B VdWContact
Gly 48 b2b3.11 40s-loop LYS 46 B HBDonor
Gly 48 b2b3.11 40s-loop LYS 46 B VdWContact
Gly 48 b2b3.11 40s-loop THR 25 B HBAcceptor
Gly 48 b2b3.11 40s-loop THR 25 B VdWContact
Gly 48 b2b3.11 40s-loop GLY 48 B VdWContact
Leu 55 b3h.2 50s-loop LEU 67 D Hydrophobic
Leu 55 b3h.2 50s-loop LEU 68 D VdWContact
Ile 64 H.7 Helix ILE 64 D Hydrophobic
Leu 67 H.10 Helix LEU 55 D Hydrophobic
Leu 67 H.10 Helix VAL 29 D Hydrophobic
Leu 67 H.10 Helix LYS 31 D Hydrophobic
Leu 67 H.10 Helix LYS 31 D VdWContact
Leu 68 CT.1 C-term LEU 55 D Hydrophobic
Leu 68 CT.1 C-term LEU 55 D VdWContact
Glu 69 CT.2 C-term LYS 31 D Anionic
Ser 70 CT.3 C-term GLN 56 D HBAcceptor
Ser 70 CT.3 C-term GLN 56 D VdWContact

Interaction pattern search
(0.00 = no similarity, 1.00 = identical)