Interactions for 1PFN — Binding Partner: CXCL4


Structure details

  • Chemokine Chain: D
  • Partner Chain: A,B,C
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Chemokine diagram

I K A G P H C P T A 30s-loop K N G R 40s-loop D L Q A 50s-loopC-term M S A K E L R C Q C V K T T S Q V R P R N-term V E L S T I H Q L I A T L L C I K P L Y K K I I K K L L E S

Interactions for this Binding Partner

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Chemokine Residue Generic Number Segment Partner Residue Partner Chain Interaction Type
Gln 9 NTc.Cm1 N-term LYS 50 B VdWContact
Leu 11 CX.4 CX GLN 11 B Hydrophobic
Leu 11 CX.4 CX GLN 11 B HBAcceptor
Leu 11 CX.4 CX GLN 11 B VdWContact
Thr 16 cxb1.6 N-loop ARG 9 B VdWContact
Thr 25 B1.3 B1 ILE 30 C VdWContact
Thr 25 B1.3 B1 LYS 31 C HBAcceptor
Thr 25 B1.3 B1 LYS 31 C VdWContact
Ser 26 B1.4 B1 VAL 29 C VdWContact
Ser 26 B1.4 B1 ILE 30 C VdWContact
Leu 27 B1.5 B1 VAL 29 C Hydrophobic
Leu 27 B1.5 B1 VAL 29 C HBAcceptor
Leu 27 B1.5 B1 VAL 29 C HBDonor
Leu 27 B1.5 B1 VAL 29 C VdWContact
Val 29 B1.7 B1 LEU 67 C Hydrophobic
Ile 30 b1b2.4 30s-loop SER 26 C VdWContact
Lys 31 b1b2.6 30s-loop LEU 67 C Hydrophobic
Lys 31 b1b2.6 30s-loop LEU 67 C VdWContact
Lys 31 b1b2.6 30s-loop THR 25 C VdWContact
Lys 31 b1b2.6 30s-loop GLU 69 C Cationic
His 35 b1b2.10 30s-loop ARG 49 B Hydrophobic
His 35 b1b2.10 30s-loop ARG 49 B VdWContact
Lys 46 b2b3.2 40s-loop GLY 48 A HBAcceptor
Lys 46 b2b3.2 40s-loop GLY 48 A VdWContact
Gly 48 b2b3.11 40s-loop LYS 46 A HBDonor
Gly 48 b2b3.11 40s-loop LYS 46 A VdWContact
Gly 48 b2b3.11 40s-loop THR 25 A HBAcceptor
Gly 48 b2b3.11 40s-loop THR 25 A VdWContact
Gly 48 b2b3.11 40s-loop GLY 48 A VdWContact
Leu 55 b3h.2 50s-loop LEU 68 C Hydrophobic
Leu 55 b3h.2 50s-loop LEU 68 C VdWContact
Leu 55 b3h.2 50s-loop LEU 67 C Hydrophobic
Gln 56 b3h.3 50s-loop SER 70 C HBDonor
Gln 56 b3h.3 50s-loop SER 70 C VdWContact
Ile 64 H.7 Helix ILE 64 C Hydrophobic
Leu 67 H.10 Helix LEU 55 C Hydrophobic
Leu 67 H.10 Helix VAL 29 C Hydrophobic
Leu 67 H.10 Helix LYS 31 C Hydrophobic
Leu 67 H.10 Helix LYS 31 C VdWContact
Leu 68 CT.1 C-term LEU 55 C VdWContact

Interaction pattern search
(0.00 = no similarity, 1.00 = identical)